RNA id: TCONS_00019654


Basic Information

Item Value
RNA id TCONS_00019654
length 1806
RNA type mRNA
GC content 0.38
exon number 4
gene id XLOC_009845
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20294976 ~ 20305104 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGACATCACTACTTTGGGAAAGATTTAAGACCCCCTGAAGAAATTTCGCTTGCCACGTAGCTGTGGCAGGGCAACTTGTAGTTTGGGAAGTTTTTCAGAACTTTTTTTGTACATGAAACATTAGTCGAGTAGTTAGAAAGTGTCAAACTGTTCTTCATATTAAGATGATTCCAGAGTTGTGGACATGCATcttttctgcatttttcttttACGTGCATGGAGCAAAACTTCCGGAGCCTGAGGTGAAAATAGAAGTTTTATACAAACCTTTCCTTTGTCATCGTAAATCCAAATACGGGGATATTCTTCTGGTTCACTACGATGGCTTTCTGGAGAGTAACGGCACAATGTTTCATTCCAGCCGCCATCAAGGAGACAAAAACCCTGTCTGGTTCACGTTGGGGATCCGAGAGGTGATCAAGGGCTGGGATAAGGGTCTTCAAAACATGTGTGCAGGAGAGAAGAGGAAACTGACCATCCCTCCAGCTCTTGCATATGGAAAAGAGGGCAAAGGTAAAATCCCTCCAGAAAGCACTCTGATATTTGATATAGAGATCATAGAGATCCGAAACGGACCCAGGTCACATGAGTCCTTCCAGGAAATGGACCTCAATGATGACTGGAAACTTTCCAAAGCTGAGGTCAAAGAATACCTGCGCAAAGAGTTTGAAAAGCATGGATATGCTGCCAATGACACCCATCATGAAGTGATGGTTGAGGACATCTTTCAGAAAGAAGATGAAGACAAAGATGGATTTATATCATCTCGGGAGTTCACTTATCAACATGATGAACTGTAATTACACACTCCTGCAGCAAAAACATTACAACATTTCCCTTCTAATAGATTCCAGTATTTGCCTACAGAGATTTGTCATGCCACAGAAGATATACAAAAGTGTGTTTGTATCTACAGTACAAGCCAGGTGTGTAAtttatgttagtttttttttaatctacacTCAGGTGATATAGAAGGTACATttgagcagtttttaatatttgaaCGTTCGAATTTAAATTTTAAGCAAAGACAATGTTATCCCATAAGTGCCTGACTCaatttaaagggccagttcactacaaaaataaatttgactccctttttactcaccctcaaatgtttccaaacatttatgagtttctattttctgttcaacacataaaaatgtgaaaattgtCATCGTTACCTGCCtcccatagtagaaaaaacaaatactatggaagtcaatagtttcaAACATTTCTCAGAATGATTTCTTTCGTGTTCATGAGAATAAAACAGAcgttaagtgtgagtaaatgaggacagatttttcaattttgggtgaactattgctttaactttatttaacttttaattataGCGGATGTTTATATGACAGGGTTTTTAACTAAAAACAGAACCTTTAATGCATTTCTGTCACTTGTTTATATATGTTTTGTAGTCCTGAAAATGCAACTTTAGAAAAAGGCCTAaccctaacaaaaaaaaaaaaaaaaaaacaacgtaaATTTCTAAAAACAGTGACATCATGCACATGCATATTACATCCTGTCTATAGATATATTTAAAGATGACCTAGGGcaggcgatttggcctaaaatctcaATTTTAACTCTATTACGATTAaggaacatttattttatttattcttttgcccTCTCCATGCCGCCCACACTCATCAATGCGACCAAGTGGACCAATGACAGAGCTTACGCTATGTGTTGATGTGACGtgtggttacattttttgagaggtcggCGTTAATCATGGCGAAGGGTATGCGACTGCGTGAAGGCTG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-040801-210 Predicted to enable calcium ion binding activity and peptidyl-prolyl cis-trans isomerase activity. Is expressed in notochord. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome kyphoscoliotic type 2. Orthologous to human FKBP14 (FKBP prolyl isomerase 14).

Ensembl:

ensembl_id ENSDART00000059619

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019646 lncRNA upstream 485859 19807943 ~ 19809117 (+) True XLOC_009840
TCONS_00021706 lncRNA upstream 485903 19807084 ~ 19809073 (+) False XLOC_009840
TCONS_00021707 lncRNA upstream 485903 19807943 ~ 19809073 (+) False XLOC_009840
TCONS_00021918 lncRNA upstream 486068 19805835 ~ 19808908 (+) False XLOC_009840
TCONS_00019645 lncRNA upstream 487843 19805021 ~ 19807133 (+) False XLOC_009840
TCONS_00021919 lncRNA downstream 225021 20530125 ~ 20531772 (+) True XLOC_009847
TCONS_00021920 lncRNA downstream 379836 20684940 ~ 20695517 (+) False XLOC_009848
TCONS_00021708 lncRNA downstream 383812 20688916 ~ 20695517 (+) True XLOC_009848
TCONS_00019660 lncRNA downstream 565911 20871015 ~ 20880205 (+) False XLOC_009850
TCONS_00019662 lncRNA downstream 565940 20871044 ~ 20887424 (+) False XLOC_009850
TCONS_00019652 mRNA upstream 55991 20198064 ~ 20238985 (+) False XLOC_009844
TCONS_00019653 mRNA upstream 60422 20220225 ~ 20234554 (+) True XLOC_009844
TCONS_00019650 mRNA upstream 100591 20167811 ~ 20194385 (+) False XLOC_009843
TCONS_00019649 mRNA upstream 130522 20161805 ~ 20164454 (+) True XLOC_009842
TCONS_00019648 mRNA upstream 140117 20056030 ~ 20154859 (+) True XLOC_009841
TCONS_00019656 mRNA downstream 191587 20496691 ~ 20515806 (+) False XLOC_009846
TCONS_00019657 mRNA downstream 191626 20496730 ~ 20514920 (+) False XLOC_009846
TCONS_00019659 mRNA downstream 433636 20738740 ~ 20800498 (+) True XLOC_009849
TCONS_00019661 mRNA downstream 565917 20871021 ~ 20889516 (+) False XLOC_009850
TCONS_00019664 mRNA downstream 590800 20895904 ~ 20897836 (+) True XLOC_009851
TCONS_00019651 other upstream 124148 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019642 other upstream 590438 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019630 other upstream 1166505 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019610 other upstream 2724042 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019609 other upstream 2777894 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019658 other downstream 191669 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019667 other downstream 608309 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019682 other downstream 1393902 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019718 other downstream 3092697 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 3302127 23607231 ~ 23607352 (+) True XLOC_009889

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_08034844_08037586.mRNA True 1075 mRNA 0.38 4 CI01000016 8034844 ~ 8038025 (+)