RNA id: TU480947


Basic Information

Item Value
RNA id TU480947
length 291
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G418683
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1488555 ~ 1489020 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTAGTTTATCCACCCACTGAAGTTTCAAAGGTGTTATTGTGTATGTGTATATCTGACCAGAGGGGGCATGTGTCCTCTGTGCATCTGCCCACTGGTGATGTGCTGTTTGGCCTGCGGCATGGAGCCCGTCTGGAAGTTCTCTGGACCTCCGGCACCAGAGCGGATGATGGCTGGCAGAGCAACAGAGCCCGTCTCCACCTTCCCAACTTTATTAAACTGCTGCTGGAGTACTGTTGACCTTTTTGGGAGACACCGAATCCTCCAACATGGTTGATTCCTCATCGCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480934 lncRNA upstream 2047 1478549 ~ 1486508 (+) True G418675
TU480914 lncRNA upstream 40720 1438778 ~ 1447835 (+) True G418666
TU480966 lncRNA upstream 105213 1383014 ~ 1383342 (+) True G418702
TU480965 lncRNA upstream 105696 1382347 ~ 1382859 (+) True G418701
TU480958 lncRNA upstream 112261 1375961 ~ 1376294 (+) True G418694
TU480923 lncRNA downstream 32387 1521407 ~ 1560655 (+) True G418671
TU480920 lncRNA downstream 75885 1564905 ~ 1568257 (+) True G418669
TU481015 lncRNA downstream 80216 1569236 ~ 1569435 (+) True G418751
TU481068 lncRNA downstream 189771 1678791 ~ 1740632 (+) True G418799
TU481067 lncRNA downstream 227507 1716527 ~ 1717649 (+) True G418798
CI01000304_01392985_01399147.mRNA mRNA upstream 89402 1392985 ~ 1399153 (+) True CI01000304_01392985_01399147
CI01000304_01375020_01379551.mRNA mRNA upstream 108739 1374871 ~ 1379816 (+) True CI01000304_01375020_01379551
CI01000304_01369056_01372878.mRNA mRNA upstream 115583 1368596 ~ 1372972 (+) True CI01000304_01369056_01372878
CI01000304_01366207_01367994.mRNA mRNA upstream 120553 1366120 ~ 1368002 (+) True CI01000304_01366207_01367994
CI01000304_01337171_01361506.mRNA mRNA upstream 127049 1337171 ~ 1361506 (+) True CI01000304_01337171_01361506
CI01000304_01681164_01706159.mRNA mRNA downstream 192144 1681164 ~ 1706397 (+) True CI01000304_01681164_01706159
CI01000304_01718700_01722248.mRNA mRNA downstream 229308 1718328 ~ 1722276 (+) True CI01000304_01718700_01722248
CI01000304_01829156_01835147.mRNA mRNA downstream 340136 1829156 ~ 1835165 (+) True CI01000304_01829156_01835147
CI01000304_01877287_01890608.mRNA mRNA downstream 386370 1875390 ~ 1890746 (+) True CI01000304_01877287_01890608
CI01000304_02136252_02167869.mRNA mRNA downstream 647232 2136252 ~ 2168463 (+) True CI01000304_02136252_02167869
TU480282 other upstream 613306 872670 ~ 875249 (+) True G418116
TU480224 other upstream 924104 558092 ~ 564451 (+) True G418059
TU480131 other upstream 1260702 226703 ~ 227853 (+) True G417987
TU481280 other downstream 603474 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 2814316 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 3684203 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 4752213 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 5863629 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile