RNA id: TU481059


Basic Information

Item Value
RNA id TU481059
length 2644
lncRNA type antisense_over
GC content 0.47
exon number 18
gene id G418790
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1770567 ~ 1809992 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCTTTCGGAAAAAGACCCCAGGCAGTTTGCTAAATTTCTCCTTTTGTGTTCCACTGAAGAAAGTTATACAGGTGTGAAATGAGTACATGCGCATTCTTGTGGTGCTGTACTAGCAAACGTAATGATACAATAAATCAAAAACAGATTTATCATGCTCTCTTCATTCATACCTTGGACAGGCGAATATGCGATGGCAAACACTGCTCCTCCAAACATGTCTTTTTTGATCTCCTTCACAAACTCGCCAGTATCTGCCATGAAGCACTGAATCCGTCCGTTGTCACGATCAGCCACACACAGCTCCCGTTTATCCGGCAGGAAGGCCAGGCTGTGCGGGATCCAGAATGGGACACGTCGCTTTCTGTCCGAGGAGCCTGCTCCCCAGTGTGAGATATATTTGCCCTCTGGTGAGAATTTGAGGATCCTGGAATTGCAATAGCCATCTGAGACATAGATGTTTCCAGTAACAGGGTCCACGGCCACATCTGTAGGTTGGCAGAAATGATTCTTGTCACTTCCTGGTTCAAAAGCTTCTCCCAAGACCAGAAGCTGCTGATCTGTACCGCTACTGCTCAGCTTGAATACCTGATGAAGTGCTACATCAGTCACCCAGTAATTATCGTCCTTGTCAGTAGTTATTCCATGAGGCAAATAGAACATATTTCTCCCTGAAGCTCTGAGCACTTGTCCTTTGACTTGATCCACCACCACGATCGTGGGCTGCTGGATGGGGCCCAGATCCTTCTGCTGGTAGATGCCTTTCATATTAAAGGATTCCCTTCCCCATATGTGATCTCCTCGGTGGAAGATGATCAGGTCACCATTAGAGTTCAGAGCCAGACCAGACACCTGCCCAAGCTGCAGCTCCACCTCAGGCCAGTCTGACACCTCCACCAGATGGGCACCCTGATCCAGAACTTCCTCTTCTCTCTTAGGCTGCTGCAGCTCCAAAGTCTCCACAGCATCTTTTTGAGGAGCTGACTCATGCTTCATAGACATCATATGGTCTGGACTGACCGGGATGGGAGTACTGGCCTCAGAAGGGATGTTTTGGAACAGTTCACTACTGCCGTCATCTCTGCAGTTCATGTAAGGCACACTATGGATGTTGTCCATGTAGTACATGATGTAGAAGTTACACATCTCATCATTGGATGTGCCTCCGATTTGAGTCTTAGTGGTTCTTCCTTCTCCCGTGAACATACAACGGGCTGCTAGTATGTCTCCATTTTTTACATCAATGGTGTTGGTGACTGGATAAAAAGCCTGTGGCAACAGCGGAGACTGGCGCCCAATCTGAGTCCACTGTCCATTTCGAACCCTGTACCCACTCACAACTTTACCAAGGCTGTGTGTGTGTGTCCTGAAGGCAAATGGATACATCGGGAAAGATTTGTAAGTGCAAGCAATGTCTGCATTGGTAACTATCTTCCCAGGAGGAATGACAGTGTCCAAAGACATCATCAGATACATGCCAGCAATAAAGGGCTGTGGTTTGGAAGTCATTCTTAAAGTGAGTCCTGAGCAGTCTTTATGATGATCTCTGAAATTGTTGACATCACCATAGTGAATTTGCAGCACAAAGTAGTTAATTCTGGTGTCTCCTCCAACTTTAAAGCCAACATCTTTGGGTAGTTTAGTTGGAGAAGCGTTCCTGGCCCATGCATACATGATCTTGGCCTGATCCCGACAGGTCCCTAGCTCTTTCCCACAATCCCAATATCCTTGAGTGGCATAAGGGGTTTTGCAGCCATATAAAATCATGTGGTGGGCTGTGTCCATACTGGCATGAGGAACAAAGTCCACTATGTAGGCCTCCCGTGACGTGGGGACAGGAACAGCCATACAGTAGTAGCTGTCAGACTCTGTTGGAATCACTCCTGGTATGCGAATATCAAGTGAAAAATTGTATGGATTGGACAGGACAAAAGGCTGCCTGGTCCTCGAGCAGTCATTGGGGTCTGACCAGGCATTTTCCTGAAACCTCTTAAACCTGTACATGGGGTTTTGGATACTGTGACTATGGCACTGAAAGAACAGCGCAAACACGAATATACTGCACCCCAGCATGCCCATCTCTGACCGGACGGAAGAACGATCAACAATAGAACTGAAAGTAAGCCGATGTGTTTTCCGCTTCAATCCTGCCCTGCCGCCATAAGCAACGGCAACACTCAGCAGCTGCTCCGGTTCTCCTATTCCTCTGATTCTCTCTTTCTTGCTCTCCTCACTTGCTCAATTTCTTCAAAAAAGTGCCATAAAAACAGTCCACGTCTCAGTCGCCTCCACTCTGAATGAAACAAGGGCTGTCCAGATATAGTATGACCACCAAAGAAGATGAAGAAAACGAGAAAGGCTTCCTGCTCCTCACGCCGGGCAGAGCATATCACAAATGCAACATCAGGCTTCTGTCACAACCTGCAAAAAGAGCAGTCAAAAAATTAGAGAATAGATAAATAAAACACCGCTTTTAAAAATATATAGTCCAGCACTTCAGAATAATCAGGGAGATTGATTCTTACATTCCCTATCAACATTCATGAAATATACATGCATAGAGTCTGTCTCTGAAGAGAGACGGGGGAATGGGTGGAGAGAGGGGAAGTGAGAGAGCACACAATAATCTAATCAAAGAGGATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481068 lncRNA upstream 29935 1678791 ~ 1740632 (+) True G418799
TU481067 lncRNA upstream 52918 1716527 ~ 1717649 (+) True G418798
TU481015 lncRNA upstream 201132 1569236 ~ 1569435 (+) True G418751
TU480920 lncRNA upstream 202310 1564905 ~ 1568257 (+) True G418669
TU480923 lncRNA upstream 209912 1521407 ~ 1560655 (+) True G418671
TU481136 lncRNA downstream 48175 1858167 ~ 1858452 (+) True G418860
TU481137 lncRNA downstream 49885 1859877 ~ 1860106 (+) True G418861
TU481145 lncRNA downstream 89164 1899156 ~ 1900776 (+) True G418865
TU481152 lncRNA downstream 99127 1909119 ~ 1909325 (+) True G418872
TU481163 lncRNA downstream 113922 1923914 ~ 1924175 (+) True G418883
CI01000304_01718700_01722248.mRNA mRNA upstream 48291 1718328 ~ 1722276 (+) True CI01000304_01718700_01722248
CI01000304_01681164_01706159.mRNA mRNA upstream 64170 1681164 ~ 1706397 (+) True CI01000304_01681164_01706159
CI01000304_01392985_01399147.mRNA mRNA upstream 371414 1392985 ~ 1399153 (+) True CI01000304_01392985_01399147
CI01000304_01375020_01379551.mRNA mRNA upstream 390751 1374871 ~ 1379816 (+) True CI01000304_01375020_01379551
CI01000304_01369056_01372878.mRNA mRNA upstream 397595 1368596 ~ 1372972 (+) True CI01000304_01369056_01372878
CI01000304_01829156_01835147.mRNA mRNA downstream 19164 1829156 ~ 1835165 (+) True CI01000304_01829156_01835147
CI01000304_01877287_01890608.mRNA mRNA downstream 65398 1875390 ~ 1890746 (+) True CI01000304_01877287_01890608
CI01000304_02136252_02167869.mRNA mRNA downstream 326260 2136252 ~ 2168463 (+) True CI01000304_02136252_02167869
CI01000304_02206338_02219356.mRNA mRNA downstream 396346 2206338 ~ 2219642 (+) True CI01000304_02206338_02219356
CI01000304_02229520_02235812.mRNA mRNA downstream 419147 2229139 ~ 2236204 (+) True CI01000304_02229520_02235812
TU480282 other upstream 895318 872670 ~ 875249 (+) True G418116
TU480224 other upstream 1206116 558092 ~ 564451 (+) True G418059
TU480131 other upstream 1542714 226703 ~ 227853 (+) True G417987
TU481280 other downstream 282502 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 2493344 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 3363231 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 4431241 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 5542657 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003691 False 1928 mRNA 0.47 17 NC_007121.7 5689510 ~ 5767172 (+)