RNA id: TU500940


Basic Information

Item Value
RNA id TU500940
length 697
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G436405
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9090130 ~ 9090826 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGCATTAAAATTGTTTTTTAATCACTGAAATGATCTATTTACAGTTTTACTGGCATCTAAACTCTCTATCATGCCTTTAATCCTGACGACAGGAATAAGAGACTTACATACAGACAACATTCGTCAACATAAGTGATATACATTGAACTGAAATATCAAAACGCTGCAATGGAATATGCATGAAATAATCCACCTTCTAATTTATAAAATGTTTGTTTTTAATTTGGAAATAAAATTTAAAATATTTAAATATTCAGGGTGATCAATATTCAAACCACCATGGGTGATGACCCTTTCTCATAATTCCATATGACTCACCTTTTTTATGTCATTGTATTTTATATTTATATCAACACAAATTAAAAATGCCTGACATAAGATATGATATATGTCCTACTATATTCTATAGCAGTGGACAAATGCATAACTCTCTCAAAACACATTTTTAAAAAAAGATTGGGAGGGGGGGTTAAAGGGTTAGTTCACCCAAAAATAAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCACACCTGTAAAACCTTCGTTCATCTTTGAAACACAAATGAAGATATTTTTGATGAAATCAGAGCGCTTTCAGTCCCTCCACTGGAAGCAACGCAATTTAAACATTCAAGATCCAGAACGATAGGAAAGACATCATTAAAGGGTTAGTTCACCCAAAAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500843 lncRNA downstream 116652 8973028 ~ 8973478 (-) True G436308
TU500854 lncRNA downstream 119508 8965702 ~ 8970622 (-) True G436319
TU500921 lncRNA downstream 166350 8923570 ~ 8923780 (-) True G436386
TU500918 lncRNA downstream 168190 8921614 ~ 8921940 (-) True G436383
TU500827 lncRNA downstream 224287 8864067 ~ 8864761 (-) True G436292
TU500846 lncRNA upstream 7646 9098472 ~ 9103121 (-) True G436311
TU500950 lncRNA upstream 25948 9116774 ~ 9117062 (-) True G436413
TU500952 lncRNA upstream 29801 9120627 ~ 9120991 (-) True G436415
TU500966 lncRNA upstream 113233 9204059 ~ 9251009 (-) True G436426
TU501098 lncRNA upstream 164620 9255446 ~ 9260573 (-) True G436555
CI01000306_09067901_09077320.mRNA mRNA downstream 12117 9067235 ~ 9078013 (-) True CI01000306_09067901_09077320
CI01000306_09054500_09064951.mRNA mRNA downstream 25179 9054169 ~ 9064951 (-) True CI01000306_09054500_09064951
CI01000306_09017460_09019520.mRNA mRNA downstream 70261 9017002 ~ 9019869 (-) True CI01000306_09017460_09019520
CI01000306_09013366_09014513.mRNA mRNA downstream 75617 9013071 ~ 9014513 (-) True CI01000306_09013366_09014513
CI01000306_08986353_09011689.mRNA mRNA downstream 78005 8985405 ~ 9012125 (-) True CI01000306_08986353_09011689
CI01000306_09290422_09292579.mRNA mRNA upstream 199278 9290104 ~ 9292819 (-) True CI01000306_09290422_09292579
CI01000306_09309973_09348444.mRNA mRNA upstream 219147 9309973 ~ 9348444 (-) True CI01000306_09309973_09348444
CI01000306_09374084_09380300.mRNA mRNA upstream 282461 9373287 ~ 9380506 (-) True CI01000306_09374084_09380300
CI01000306_09381571_09461159.mRNA mRNA upstream 290361 9381187 ~ 9461573 (-) True CI01000306_09381571_09461159
CI01000306_09522093_09523814.mRNA mRNA upstream 431207 9522033 ~ 9525553 (-) True CI01000306_09522093_09523814
TU498677 other downstream 2223194 6866656 ~ 6866936 (-) True G434338
TU498395 other downstream 2637879 6437406 ~ 6452251 (-) True G434086
TU498319 other downstream 2728487 6355180 ~ 6361643 (-) True G434016
TU498286 other downstream 2892920 6196107 ~ 6197210 (-) True G433985
TU497952 other downstream 3048847 6041014 ~ 6041283 (-) True G433670
TU500988 other upstream 565453 9656279 ~ 9671776 (-) True G436446
TU501173 other upstream 744199 9835025 ~ 9836323 (-) True G436626
TU501193 other upstream 931322 10022148 ~ 10025375 (-) True G436643

Expression Profile