RNA id: CI01000310_00138858_00147748.mRNA


Basic Information

Item Value
RNA id CI01000310_00138858_00147748.mRNA
length 2211
RNA type mRNA
GC content 0.43
exon number 16
gene id CI01000310_00138858_00147748
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 138547 ~ 147755 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAAAAGCCTTCTCCTCAGTTTTCTTCTTGCACTTTGCTTAGGAAAGGACAGAATAATCTTCCAGCCTCAGTAAGAGACAAAAGGTATGTTTTTTATCATATCATGTTGTTATCATTTCAGTTTTTAAATGGAATATTCAAGCATGAGAAAGTAACTGACATGCAAATGAATTTGTTTTAGTTATGTCAAAGCTTCAATAAAGGTTGATCTAATTTAAATCTAGCCAATTGAAGAGTAAAACCTAAGTAAACAGAACTATTGGAAATTTTTGCAGTGTGCTGCTTTCTGTTCAACAGATCTGATCCACAATGCCAGCACCTGGTGTGTGTTTAAACATTTTGTCGGAGCGTAATGTCAAAGATGGACAGGGATCTCCCGACAAACCGGAAAAGTTCCTGGATCAGGACTTCCACCGGCTCAAGCAGGTCTGCCTAAAGGAAAGACTGAAGTTTATAGACAACTTGTTCCCTCCAGAGATGAAATCAATCGGTTTTGGTCCTCTGAAGAGTGAAGAACTCTGGAGAGTAGTGTGGAAACGACCACATGAACTGGTGCCGAACCCTGTTTACATTGTTCAAGGAACTTCAAGGTTTGACTTCATTCAGGGTAGATTAGGTAACTGCTGGTTTCTGGCATCGGTTGGAGCTCTTACATTTCAAAAACGGCTTATGAAGCAGGTTATCCAGGATGACCAAAATTTCTCTGTGGATTATGCAGGAATATTTCACTTTAAGTTCTGGAGATTTGGATCATGGGTGGATGTGGTTATCGATGACAAACTGCCAACTATTGACGGCCAACTCGCCTTTGTTCAGTCTAAAACACCAAATGAATTCTGGCCTGCTTTGTTAGAGAAAGCTTATGCTAAAGTGTGCGGCTCTTATGCGGCTATGGACGCAGGAAACATATCAGAAGCTATCACGGACTTCACCGGTGGACCACACATGACCATTAAACTGAGTGATGCATCAGACAAGCTGTGGGACACCATGAGACGAGCCAGCCAATCAGAATCCCTGATGGGATGTGGCACTCCTGGAGGGCAAGCAGGTCTGCTGCAAAATAATGTGTTACCCAATGGCCTTGTGGAAATGCATGCGTACACGGTCACAGGAGTAGCAGAGGTTGTATGTGGAGGTCGTCCAGTGAAGCTGGTGAGGATCTTTAACCCTTGGGGTAAAGGAGAGTGGAACAGGGACTGGAGCGACAGATCCCCTTTGTGGGAACTTGTTCGTCCTGAGGACCAAAAATACAAAGTTGTGCTCGACAATGGAGAATTCTGGATGTCAATGGAGGATTTCTGCAAGAATTTTTCAGATTTGGATATTTGTTGCTTGGACGTGAACGTTCTTGCTGGATCTCATTCTTCATCCTGGAAAATTGAAATGAACAAAGGCCAGTGGGTGATGGGAACAACAGCTGGCGGTTGTCCAAATGACCTAGAGAGTTTTTCAAAAAATCCCCAGTTTCGTGTGACTCTTAAGGAGACTGTTGAAGACCCCGGACATGAAAGCTCTCCAAATCTCCTCGTTTCTCTCATTCAGAAATCTCACAAGAGAAACAGGCACTTGGCAACCAATTTATATATTGGCTTCAACATTTATGAGTTAAAGGACCAAAGGGAAAAATTCCCTGCCTCATTCTTCAGAAACACCCGTCCCGTTGGAAAAAGCGAATCCTTCATCAACGCTCGGGAAATTATGGAGTTTTTCAGATTTAAAGCAGGCGACTACCTCATCGTTCCTTCAACTTTCGAGCCGAATGAAGCTTCATCCTTCCTTCTGACAGTCTATTCAAAGACAGAAGCCGTCATTGAAGACTCTTCTGGATATGGCATAACAAGAACAAAGTTGATTCCCAGGGATAATGATGATTCCTTCCAACTCTTTCTACAATATGCAGATAAGGATATTTTCTATGGCATGGATGTGTCACGCACAGGAAGTCTGTCTCTGAATGAACTCAGAAATGCACTTAAGGTTGCAGGGTTTATATTGAGTGACAATATGCTGAATCTCATGGCGCTCAGATACGGTGACTCCAGCGGTGAAATTACACTAGAAAACTTTGTTGTCCTTGTCCTGCGGATGGACTGCATGGCCAAAACATTCAAGAGACTCGCTGCTGGGGGGCCAAACATGATGCTGGGAGAAAATGAAGTAATGTTTTTATACAAATATTTCAATCATCAGAATGCATAGTAGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503701 lncRNA upstream 4157 134062 ~ 134390 (+) True G438881
TU503666 lncRNA upstream 76573 61585 ~ 61974 (+) True G438847
TU503653 lncRNA upstream 85088 53192 ~ 53459 (+) True G438834
TU503651 lncRNA upstream 88575 49772 ~ 49972 (+) True G438832
TU503647 lncRNA upstream 95013 42395 ~ 43534 (+) True G438828
TU503717 lncRNA downstream 45294 193049 ~ 217248 (+) True G438896
TU503735 lncRNA downstream 82041 229796 ~ 231369 (+) True G438913
TU503720 lncRNA downstream 94398 242153 ~ 251139 (+) True CI01000310_00215248_00279025
TU503892 lncRNA downstream 268861 416616 ~ 419017 (+) True G439052
TU503895 lncRNA downstream 278957 426712 ~ 490523 (+) False G439054
CI01000310_00003244_00012743.mRNA mRNA upstream 125633 3244 ~ 12914 (+) True CI01000310_00003244_00012743
CI01000310_00215248_00279025.mRNA mRNA downstream 67493 215248 ~ 279648 (+) False CI01000310_00215248_00279025
CI01000310_00298547_00317035.mRNA mRNA downstream 150792 298547 ~ 318355 (+) True CI01000310_00298547_00317035
CI01000310_00495852_00504711.mRNA mRNA downstream 348097 495852 ~ 504711 (+) True CI01000310_00495852_00504711
CI01000310_00513998_00524767.mRNA mRNA downstream 366243 513998 ~ 525606 (+) True CI01000310_00513998_00524767
CI01000310_00629492_00629967.mRNA mRNA downstream 481737 629492 ~ 630832 (+) True CI01000310_00629492_00629967
TU504002 other downstream 500811 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU503981 other downstream 502203 651976 ~ 653356 (+) False G439115
TU503984 other downstream 502203 651976 ~ 653337 (+) True G439115
TU503983 other downstream 502237 651976 ~ 653356 (+) True G439115
TU504536 other downstream 1074251 1222006 ~ 1239405 (+) True G439538

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022359 True 2460 mRNA 0.44 21 NC_007128.7 3128273 ~ 3166897 (+)