RNA id: TU503653


Basic Information

Item Value
RNA id TU503653
length 268
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G438834
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 53192 ~ 53459 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCGCAGCCATAAAAGAAAGATCCATGATGATCTGGTGTGTTTAATTCCTGGATGAAGTATTTCTTCAGCTCCTCGTGGGATTTTCACAGCAGGTTTCCTGACTCCAGACGTCCACAGAGTTCATCCTTACAGATCCATAGTTGAAGACAGAAATCTTGAACGAGTCGACGTGGAGAGAGCAGGACAAAGAGAGAAAACACCAATGTTGTGGCTGCGAGAGACTCTCTGTGTTCCTCTCATACACTCACTCTCACTCGTCCACTCTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503651 lncRNA upstream 3220 49772 ~ 49972 (+) True G438832
TU503647 lncRNA upstream 9658 42395 ~ 43534 (+) True G438828
TU503642 lncRNA upstream 17008 35891 ~ 36184 (+) True G438825
TU503641 lncRNA upstream 19400 33017 ~ 33792 (+) True G438824
TU503637 lncRNA upstream 21238 31419 ~ 31954 (+) True G438823
TU503666 lncRNA downstream 8126 61585 ~ 61974 (+) True G438847
TU503701 lncRNA downstream 80603 134062 ~ 134390 (+) True G438881
TU503717 lncRNA downstream 139590 193049 ~ 217248 (+) True G438896
TU503735 lncRNA downstream 176337 229796 ~ 231369 (+) True G438913
TU503720 lncRNA downstream 188694 242153 ~ 251139 (+) True CI01000310_00215248_00279025
CI01000310_00003244_00012743.mRNA mRNA upstream 40278 3244 ~ 12914 (+) True CI01000310_00003244_00012743
CI01000310_00138858_00147748.mRNA mRNA downstream 85088 138547 ~ 147755 (+) True CI01000310_00138858_00147748
CI01000310_00215248_00279025.mRNA mRNA downstream 161789 215248 ~ 279648 (+) False CI01000310_00215248_00279025
CI01000310_00298547_00317035.mRNA mRNA downstream 245088 298547 ~ 318355 (+) True CI01000310_00298547_00317035
CI01000310_00495852_00504711.mRNA mRNA downstream 442393 495852 ~ 504711 (+) True CI01000310_00495852_00504711
CI01000310_00513998_00524767.mRNA mRNA downstream 460539 513998 ~ 525606 (+) True CI01000310_00513998_00524767
TU504002 other downstream 595107 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU503981 other downstream 596499 651976 ~ 653356 (+) False G439115
TU503984 other downstream 596499 651976 ~ 653337 (+) True G439115
TU503983 other downstream 596533 651976 ~ 653356 (+) True G439115
TU504536 other downstream 1168547 1222006 ~ 1239405 (+) True G439538

Expression Profile