RNA id: CI01000310_00215248_00279025.mRNA


Basic Information

Item Value
RNA id CI01000310_00215248_00279025.mRNA
length 3173
RNA type mRNA
GC content 0.45
exon number 20
gene id CI01000310_00215248_00279025
representative False

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 215248 ~ 279648 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAAAACCGGACTTGCCCTTTTGTACGATGAACACACAAGTAACACCTACGACGTTCGCTTAAAGTTAACGAAAGAGCTGTTAATCATACAGAAGCAGGATGTGGTGTGCGTAAACGGTGGCGACTCCCACTTAAATGGGGGAGCAGAACATAAAGTGCCTGTGGTCATCTCGAAGATTTTCAAAGATCAAGTAGCCGATCAGACGGGGATGCTGTTTATCGGCGACGCCGTGTTGCAGGTCAATGGCATTAACGTGGAGAAGTGTACACACGAGGAAGTCGTTCATCTTTTGCGAACGGCAGGGGATGAAGTCACCATCACTGTACGTTACCTCAGGGAAGCGCCGGCCTTCTTAAAACTCCCATTAGTGTCATCTAGGGCAGCACAACATGAAAGTCAAATCAAGTTTAATTATCCAGCCTTGGTCCGAATAAACAGCAGAGTGGAGAATATGACAGGAGAAAGAGCTTCACATGTAATTGGTGATGGCTTGAGAATTCAGCCACAAGCCCCGTCGTCGCCCTCCTCACCTTCGGCTAATGAACCAAAGTATGAGAAACGCTGGCTCGATGCCGTCACCCTCCCTCTCTTCATGGCTCGAATCTCTCGACGCAAAGCTGGAACCGACAAATTAAGATCGAACAGTTTTGAAGTCATTGCCTTAGATGGAGTTTGCACGCACGTTCTTCAATTTTGCACTGCAGGAGAAAGCACAGACTGGCTTCAAGCAATATCAACCAACATCAACGATTTGATGCAGGAGAGCATAAAGACGGCGAATAAATACTGTTCTCCTGATGATCAGATTGTCCACATGGGTTGGGTATGCGAGCAGCTCCAGGGCAGTGACGCCGATTCGACACGCGGCTGCAGGTTTCTGGCGTTGAGAGGCTCTTCTCTTCTCATCTTCAGGAGTCCTCCTGTCATGGCGTCAGACTGGGCTCAAGCAGAGGCTAGTTTTCACCTCTGTGAGGTTCTCTTTAAGGTTCATAAGCTATGGATAGCCGAAGACTGCTGGATACAGACCAAGTTTTATATGGGCCTCCAGCAGGACGGTGAGCTGCGGGACAGTGAACCCTTCTGCTTTAGTGTGCTTGTGGGTCACGGCCAGAGCTTCTGCTACAGCGTTGAGCTGGGCTCAGAACTGGTGCTGTGGGAGAAAACATTTCAGAGAGCAGTGTTCATGGAGGTGCAGAGAGTACGGGGCAGCTATTATGAAGTATATGCTAACATAAGTTCATGGGATGAAGGGGATTTAAGTCTCAGCAGCTCCAGAGACTTGCGTTACTCACATTTAAGTAATCTTAAATACCACCCGGGGTCAAATGCAGAGCGTCACATTACGGCTCTCAAAGTTTCGGCGACCCTCGAACGAATCTCTAGCATGCAAGTGTGCATTACTACAGGATGTTTATTTATGGCTCATCAGCATTATGCCGAACACTCACCAACCAGCTCAAACCCCCTTAAGCTCTTCATGTTGTGCACAGTACGTACCATTAGACGACAGTGTGACAGTTTTATGAGGCAGCGTGAAAGATCTTATAATCATTTTATATGGCGCATTCATGTGGGGAAGTCAGCGGGAGTTCAGGATCACGACTTCTTCGGGTTCAATCCCTCTGGAGAAGCTCTCCAATTAGCGGCGTGTAGTCTGTGCTTTACATGTGACAGCCGACACTTACGCGAGGCGACAGTAAGCACTGCAAATCCGCTTCGCTGGCGTTTGCTTTCTCTGGCAGCTGAATTTCATGCGCCTCTTAAAATGCGACAGCACATCTGTGCTGCGAGTAAACGGCCTCTTCGGTTCCAGCAGATACGTCCTATGATGACTGAAGATCATGAGCTTGAGTCGAAACAGCAACAGAAAGGTAACAGGACGCCTGAATTGAGTAGAAACTTTCCCGAAGTTTTGAGAAGTACATCTTGTGGTTTTCAAGTTCATCCTCCACTCAGAGAATCACGAACTTCGTGGAACAAAACACAGAGACTGAGGTTATCAGACACATTTACAGAAGCCCTTCAGACGCTGCCGAGATCTTTGCTTCCTCTCGCGCAGTGTTGGACAGCCGTTTCCATGGCAACTGAGCCGTACCTGTCTTATTCCCGGGAATATAAAGCATGTGAGATCAGGACTGTTGAGAATGTTCAGCCATTTAAATATGAATGTTGGGTCTGTTGTTTTACAGTGTTTACAGCAAACAGTGGTCTCTCGAAGAGCTACATGTGCAGCAGTCAAGGGAAGATCCTGTGCTTCACAGTCGACTTTGAGTCGGGCTTCTCCTGCTCCGAGAGCGTTTCAAAGAAAACCATCTGGAAATATAAATTCTCCCAGCTGAAGGGTTCATCGGATGACGGCAAGACACGAGTGAAGCTTTTGTTCCAGAATTCAGAGAATAAACAGATTGAAATGAAGGAGCTGGAGTTTGCGAATCTGACGGCCGTCCTTCACTGCATACACTCGTTCATCGCTGCCAAAGTGGCCACGGTGGATCCCGTCTTCGTCAACAATCAAAGTCTCACGCAGAAGTACATGTGCAGCAGCTAGAAACATCCGTGTACATTCTCTGATTTTATGCACAATATCTATGGATATATCTAGTTCTTGTTATTTTTGTACGAATCTTCTAAATCCAGAAGGACGTTTAAGGAACACTTTGAGTAGATGATATTTTGACATGCATCGAGTTATGATTTCTTTCTTACCTACTAATATGATCAATCATGTGCTTAACCTGAACTCATATTGATTATGTAGCAAAGCAGATGTTGACATACGGCATTATAAGTTGATGCATGAACTGCATTTGACAATTTTACAGGGCAAAACGGGTGAAACTCTGAGACTTTCAGCTGTAATATCAACCAAACTTTTGTGTTCTTTTGCCCTTTTGTTTATTCAATGCCTCAAACCTCTTAATTTAGCACAAAGCATAATAGCAAGTCATATACGTATAAGATTTTAATGTCAATTCTGATGCTTCTCTGCATTTGAATCAAAGTGCTGCCTATGTTCAAATTAATTTGATGTGTTAATATGAAGTAGTTCTTTCATTAACAGTAATTAGACAGTCTTGCCAGCTACTGTCCTTAAAAATGGAAATTTTCTAAAAATCAAGGTCCCTGATCTACTGTTCTATTTAGTTTGATGTTAATCCAGTTCTTTTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503701 lncRNA upstream 80858 134062 ~ 134390 (+) True G438881
TU503666 lncRNA upstream 153274 61585 ~ 61974 (+) True G438847
TU503653 lncRNA upstream 161789 53192 ~ 53459 (+) True G438834
TU503651 lncRNA upstream 165276 49772 ~ 49972 (+) True G438832
TU503647 lncRNA upstream 171714 42395 ~ 43534 (+) True G438828
TU503892 lncRNA downstream 136968 416616 ~ 419017 (+) True G439052
TU503895 lncRNA downstream 147064 426712 ~ 490523 (+) False G439054
TU503897 lncRNA downstream 161186 440834 ~ 441780 (+) False G439054
TU503894 lncRNA downstream 209978 489626 ~ 490523 (+) True G439054
TU503917 lncRNA downstream 219125 498773 ~ 500118 (+) True G439072
CI01000310_00138858_00147748.mRNA mRNA upstream 67493 138547 ~ 147755 (+) True CI01000310_00138858_00147748
CI01000310_00003244_00012743.mRNA mRNA upstream 202334 3244 ~ 12914 (+) True CI01000310_00003244_00012743
CI01000310_00298547_00317035.mRNA mRNA downstream 18899 298547 ~ 318355 (+) True CI01000310_00298547_00317035
CI01000310_00495852_00504711.mRNA mRNA downstream 216204 495852 ~ 504711 (+) True CI01000310_00495852_00504711
CI01000310_00513998_00524767.mRNA mRNA downstream 234350 513998 ~ 525606 (+) True CI01000310_00513998_00524767
CI01000310_00629492_00629967.mRNA mRNA downstream 349844 629492 ~ 630832 (+) True CI01000310_00629492_00629967
CI01000310_00648731_00650082.mRNA mRNA downstream 369083 648731 ~ 650119 (+) False CI01000310_00648731_00650082
TU504002 other downstream 368918 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU503981 other downstream 370310 651976 ~ 653356 (+) False G439115
TU503984 other downstream 370310 651976 ~ 653337 (+) True G439115
TU503983 other downstream 370344 651976 ~ 653356 (+) True G439115
TU504536 other downstream 942358 1222006 ~ 1239405 (+) True G439538

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022360 False 4031 mRNA 0.47 18 NC_007128.7 3379673 ~ 3570911 (+)