RNA id: TCONS_00019878


Basic Information

Item Value
RNA id TCONS_00019878
length 1989
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_009982
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 27603739 ~ 27609172 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGCACACTTTCTTTCAGCCTTTCTTTCGAGGAGGAAGTCGCTCTGCAAAGAAGAAGACATCTCTCCGTTTGCAAAAAAGAAATGAAGCGCAGAAATAACCGCAATGTCACCGAGACTTACTTTGAGGGAGAGCATTTGAGTCTCGCAGACTTGAAAAAGGAGTCTGTAGAGAATGGGAGAATGTGGTGTTCGGGGGATTTTTACAGATTCAGGGTTCAGACAGCCACCAGAGCTGGTGGATAATGATGAGAACTATTTTCTCTGGTGGGATCTATCCGTCACATCTGATGAAATATCCTCAGCTGAAGAGGATTTTCTCATGTCCTTATTCCCTCGTCGAAGTGCTGCACAGATTCGCAACCAGTCACCCTTCTTAAAGCAATTTACCAGCTCCAAGGCCTTCCAGAAGGATTCTTCCTATGGAAACTTCCGCTTCACCTTTTCACTGAAGGAGCTTCTCTGGCACTATGGAGATCAGTTCTGTGGTGGCCACAGTCCAGTTCTGCGAGTTTATGAGACTGCGCTCTACCGGCGAGAGATTGTCTATAAGATTGTGGTGCACCCTCGTGACAAAAATCATCTTTATGAGAGTTATCCTCGACTTCCTGATCAAGGTGATGGTGTGTGTGGTTACCACGATGGAGCCATGTGGTGGCGCTGTCAGGCCCCTTCTGAAACCTACAAGCTCAAGCTTGATGTGAACAGGTTTGACAAAAATGTTAGTGTGAGCTTTCATTACAAAGAAGAATACTACGTGTGGGACCATGTGTGTGTAGCTTTCCACATGGAGCCAAACTGGGTGTTGCACGTGAACCAGGACAGGCTGTTAAAGAAAGTGACTGTTTGTGAAGTGATTCCACCTTGTCTTCTGAGACCTCCGGAGACTCCACTGAGTTTAAACGAGGCCCGGCATGTATTAGCTAGTATTTAAGCTATACGGCTAGCCTAAGCTAAACGCAATGTAGTCCATGCAAATGCTTTATAAAACACAGCAGCATATAATCATGTAATTAATGTTAGTTTTGATTAAAATGCCTGAAGTTATAAGAAATTTTCACTGTTATTCACTGTTGTAAATATAAAACACGTAAACACTTACATGTCACAGTGGCATTTTTTAATAGGTTGCAATTTTTTAGATCTGCTGGAAATTTTTCCTCAAACATTTTCTTGTTCATATTTTTTACTCTTGTTTTTTTAGGATTTGAGAAATAATctttaaactaaaacatttatgCAGAAACCAAAATAATGACTTATGTAAGAAATGTGCCTTGATAGTGTCCAATTTCCACTCTAAACTGTGTGTTGATGTTCACATTTCGAAAAGGGTCATTATTATAAATAAGATAAGTCAACAGATTTGTTGACTGCACTATTTGTGACGATCACATATTGAGCAAATGGTTACTGAAAGAAATATCCATGTAGTCACTCtccaaatattctgttttgtaactgttttatcttattgtaagttgtccctgtactaggcgccttgacgttgcgccttgacattcttgagcactggataaaattgttctgcctaactgagctgaatatttgcacgtattcataacccatgtaaccctgagtatgatgtataaaagctgggaataccccagtcttctttagaagagagcaataaactgttggattcacatctctcagttgttgttgccttcctggagctccagcttactgaggaaacacacagacgATCTGCAATTTATCCCAACAGTTACCGACTGTGGAATAGGGACTGGTGTGGGAGACTGACAACCATCTCAGACTATGGGGTGTCGAAATTTAATTAACACATAGGTCAAAGCTGTGACGATAGCCAAGAAGCaacttcatttacatttaaaggcaGTAAACTGTATGAAACGACTGAATGTTCAGGGTTCATGCTGACTGCGCTGAACGGGCACTGCCATGTACTTTGATACTGCTATACTgaataaacatcttcatttgAGATCTT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-031116-15 Is expressed in several structures, including digestive system; epiphysis; macrophage; mesoderm; and ventral mesenchyme.

Ensembl:

ensembl_id ENSDART00000136316

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019876 lncRNA upstream 32388 27569837 ~ 27571351 (+) True XLOC_009980
TCONS_00021950 lncRNA upstream 46950 27543588 ~ 27556789 (+) False XLOC_009979
TCONS_00021720 lncRNA downstream 230755 27839927 ~ 27873367 (+) True XLOC_009984
TCONS_00021952 lncRNA downstream 440382 28049554 ~ 28050028 (+) True XLOC_009986
TCONS_00021953 lncRNA downstream 660843 28270015 ~ 28271395 (+) False XLOC_009987
TCONS_00021954 lncRNA downstream 1051223 28660395 ~ 28667333 (+) False XLOC_009994
TCONS_00021955 lncRNA downstream 1051231 28660403 ~ 28663860 (+) True XLOC_009994
TCONS_00019877 mRNA upstream 1227 27593698 ~ 27602512 (+) True XLOC_009981
TCONS_00019875 mRNA upstream 22251 27564270 ~ 27581488 (+) False XLOC_009980
TCONS_00019868 mRNA upstream 44843 27543545 ~ 27558896 (+) False XLOC_009979
TCONS_00019871 mRNA upstream 45166 27543893 ~ 27558573 (+) False XLOC_009979
TCONS_00019864 mRNA upstream 101037 27442549 ~ 27502702 (+) False XLOC_009978
TCONS_00019880 mRNA downstream 5817 27614989 ~ 27622183 (+) True XLOC_009983
TCONS_00019881 mRNA downstream 348636 27957808 ~ 27998856 (+) True XLOC_009985
TCONS_00019882 mRNA downstream 660865 28270037 ~ 28371330 (+) True XLOC_009987
TCONS_00019883 mRNA downstream 774586 28383758 ~ 28512860 (+) False XLOC_009988
TCONS_00019884 mRNA downstream 774620 28383792 ~ 28451338 (+) True XLOC_009988
TCONS_00019873 other upstream 48499 27549842 ~ 27555240 (+) False XLOC_009979
TCONS_00019866 other upstream 48603 27543308 ~ 27555136 (+) False XLOC_009979
TCONS_00019885 other downstream 778874 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019905 other downstream 1407764 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019912 other downstream 1607102 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019938 other downstream 2393580 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 2471371 30080543 ~ 30080661 (+) True XLOC_010021

Expression Profile

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