RNA id: TU504500


Basic Information

Item Value
RNA id TU504500
length 281
lncRNA type intronic
GC content 0.36
exon number 1
gene id G439507
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1150740 ~ 1151020 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTGTGACATATCAGGACACAAATTTGTATAATGACATGGGTATGACATAGGTATTACAAGGAGAGGGTGACTTATGAGGACATTACCCCATGTCCCCATTTTTCAAAAGGTTTATAAATCATACAGAATGAGTTTTTTGAGAAAGTAAAAATGTGCACAGTTTTTTGTGATGGGTAGGTTTAGGTGTAGGGTTGGTGTAGGGCGATAGAAAATACGGTTTGTACAGTATAAAAACCATTACGCCTATGGAATATCCCCACAATTCACAAAAACAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504498 lncRNA upstream 1784 1148611 ~ 1148956 (+) True G439505
TU504478 lncRNA upstream 22874 1127630 ~ 1127866 (+) True G439486
TU504448 lncRNA upstream 48532 1101821 ~ 1102208 (+) False CI01000310_01103452_01164843
TU504441 lncRNA upstream 54224 1096155 ~ 1096516 (+) True G439456
TU504442 lncRNA upstream 55078 1095086 ~ 1095662 (+) True G439457
TU504505 lncRNA downstream 4274 1155294 ~ 1155763 (+) True G439511
TU504511 lncRNA downstream 10287 1161307 ~ 1161581 (+) True CI01000310_01103452_01164843
TU504513 lncRNA downstream 11919 1162939 ~ 1163156 (+) True G439519
TU504539 lncRNA downstream 46584 1197604 ~ 1198070 (+) True G439541
TU504569 lncRNA downstream 110326 1261346 ~ 1261761 (+) True G439565
CI01000310_00861939_01046631.mRNA mRNA upstream 104109 861939 ~ 1046631 (+) True CI01000310_00861939_01046631
CI01000310_00784238_00790497.mRNA mRNA upstream 358846 784238 ~ 791894 (+) False CI01000310_00784238_00790497
CI01000310_00744256_00746991.mRNA mRNA upstream 403635 743378 ~ 747105 (+) True CI01000310_00744256_00746991
CI01000310_00738120_00739067.mRNA mRNA upstream 410925 737918 ~ 739815 (+) True CI01000310_00738120_00739067
CI01000310_00721054_00727169.mRNA mRNA upstream 421428 720837 ~ 729312 (+) True CI01000310_00721054_00727169
CI01000310_01196439_01199290.mRNA mRNA downstream 44680 1195700 ~ 1199377 (+) True CI01000310_01196439_01199290
CI01000310_01207513_01226750.mRNA mRNA downstream 56037 1207057 ~ 1227172 (+) False CI01000310_01207513_01226750
CI01000310_01257447_01269508.mRNA mRNA downstream 106307 1257327 ~ 1270033 (+) True CI01000310_01257447_01269508
CI01000310_01394296_01394727.mRNA mRNA downstream 242069 1393089 ~ 1394908 (+) True CI01000310_01394296_01394727
CI01000310_01411744_01412226.mRNA mRNA downstream 260724 1411744 ~ 1412467 (+) True CI01000310_01411744_01412226
TU503984 other upstream 459548 651976 ~ 653337 (+) True G439115
TU503981 other upstream 482688 651976 ~ 653356 (+) False G439115
TU503983 other upstream 482688 651976 ~ 653356 (+) True G439115
TU504002 other upstream 501187 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU504536 other downstream 70986 1222006 ~ 1239405 (+) True G439538
TU504694 other downstream 350866 1501886 ~ 1501950 (+) True G439675
TU504915 other downstream 760581 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1948397 3099417 ~ 3136328 (+) True G440505

Expression Profile