RNA id: TU504505


Basic Information

Item Value
RNA id TU504505
length 470
lncRNA type intronic
GC content 0.33
exon number 1
gene id G439511
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1155294 ~ 1155763 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATAATCATCAATATTTTTTTCATCAATAATCAAAGCTAGTGTGTCGATTTAATTAAAAATATATATATAGGCTATTGCATATTTTAAAATATTACATAATTCATCAATGCCCGTTTGTCATGTATAATACATCAACCAATCGTAGGTATGGCACAAGTTCAAATTTCATTGGACAATTAGAGCGGTAATTTTCCGTTTTAATTCATTAATCGGTTGAAAATTACATGGACCGAAGACGAGCATGCATTTGTGGAGCGATTTCTGCGGTTTGTGTCATTTTATAAATCAAATTGCATCGCTGACAAAATGGATGTTAACTGACTGCACCACACTGCACCATGCAGCACCAAAACTCGCATTAATGGTAAGTAGTGTTCAATTCATTTAGTGTATTTATGTATATTGATACACCGTTTACTATTTGATGAAACTATCATTGTTAATGAAGCCCAAGTGCCACCTACAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504500 lncRNA upstream 4274 1150740 ~ 1151020 (+) True G439507
TU504498 lncRNA upstream 6338 1148611 ~ 1148956 (+) True G439505
TU504478 lncRNA upstream 27428 1127630 ~ 1127866 (+) True G439486
TU504448 lncRNA upstream 53086 1101821 ~ 1102208 (+) False CI01000310_01103452_01164843
TU504441 lncRNA upstream 58778 1096155 ~ 1096516 (+) True G439456
TU504511 lncRNA downstream 5544 1161307 ~ 1161581 (+) True CI01000310_01103452_01164843
TU504513 lncRNA downstream 7176 1162939 ~ 1163156 (+) True G439519
TU504539 lncRNA downstream 41841 1197604 ~ 1198070 (+) True G439541
TU504569 lncRNA downstream 105583 1261346 ~ 1261761 (+) True G439565
TU504642 lncRNA downstream 202135 1357898 ~ 1367503 (+) True G439628
CI01000310_00861939_01046631.mRNA mRNA upstream 108663 861939 ~ 1046631 (+) True CI01000310_00861939_01046631
CI01000310_00784238_00790497.mRNA mRNA upstream 363400 784238 ~ 791894 (+) False CI01000310_00784238_00790497
CI01000310_00744256_00746991.mRNA mRNA upstream 408189 743378 ~ 747105 (+) True CI01000310_00744256_00746991
CI01000310_00738120_00739067.mRNA mRNA upstream 415479 737918 ~ 739815 (+) True CI01000310_00738120_00739067
CI01000310_00721054_00727169.mRNA mRNA upstream 425982 720837 ~ 729312 (+) True CI01000310_00721054_00727169
CI01000310_01196439_01199290.mRNA mRNA downstream 39937 1195700 ~ 1199377 (+) True CI01000310_01196439_01199290
CI01000310_01207513_01226750.mRNA mRNA downstream 51294 1207057 ~ 1227172 (+) False CI01000310_01207513_01226750
CI01000310_01257447_01269508.mRNA mRNA downstream 101564 1257327 ~ 1270033 (+) True CI01000310_01257447_01269508
CI01000310_01394296_01394727.mRNA mRNA downstream 237326 1393089 ~ 1394908 (+) True CI01000310_01394296_01394727
CI01000310_01411744_01412226.mRNA mRNA downstream 255981 1411744 ~ 1412467 (+) True CI01000310_01411744_01412226
TU503984 other upstream 464102 651976 ~ 653337 (+) True G439115
TU503981 other upstream 487242 651976 ~ 653356 (+) False G439115
TU503983 other upstream 487242 651976 ~ 653356 (+) True G439115
TU504002 other upstream 505741 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU504536 other downstream 66243 1222006 ~ 1239405 (+) True G439538
TU504694 other downstream 346123 1501886 ~ 1501950 (+) True G439675
TU504915 other downstream 755838 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1943654 3099417 ~ 3136328 (+) True G440505

Expression Profile