RNA id: TCONS_00019905


Basic Information

Item Value
RNA id TCONS_00019905
length 469
RNA type processed_transcript
GC content 0.52
exon number 4
gene id XLOC_010002
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 28994709 ~ 29024769 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAAAGCAAAGACATGGCTTACGCACAGGCTTATCTCAACAGGGTACGTGAGGCTTTACAAGATGTCCCAGGAAAAGTGGAGGAGTTTTTAGGTCTGCTTTATGAGTTTGACCAAGCCGGAGAGAGCCACAGTGTTATAGAGTTGTTTGCCCAGCTTAAACAGCTGCTCAAGGACTGGCCTGAGCTGCTCAAGGACTTTGCTGCTTTCCTTTTGCCCGAACAAGCGCTGGAGTGTGGACTGTTTGAGGAGCAGCAGGCCTTTGAGAGGAGTCGGCGGTTTCTGCGTCAGCTGGAGATCAGTTTTGGGGAAAATCCTTCTCATTATCAGAAGATTGTCAGAGCCCTGCAGAGTGGAAGTCCTCTCAGTCCTGCTGGCATTGAAGAGCACGTCCAGGCCAGTTTGAAGAGGCTGTTTGGCCAGAGGATGTGGCCACTGGGACAGATGGAGAAGCAGGCGTGAGTGTGACC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030183 B cell differentiation biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-070117-2447 Predicted to enable transcription coregulator activity. Acts upstream of or within notochord morphogenesis. Predicted to be active in nucleus. Is expressed in intermediate cell mass of mesoderm and pronephros. Orthologous to several human genes including GON4L (gon-4 like).

Ensembl:

ensembl_id ENSDART00000149315

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021954 lncRNA upstream 349603 28660395 ~ 28667333 (+) False XLOC_009994
TCONS_00021955 lncRNA upstream 353076 28660403 ~ 28663860 (+) True XLOC_009994
TCONS_00021953 lncRNA upstream 745541 28270015 ~ 28271395 (+) False XLOC_009987
TCONS_00021952 lncRNA upstream 966908 28049554 ~ 28050028 (+) True XLOC_009986
TCONS_00021720 lncRNA upstream 1143569 27839927 ~ 27873367 (+) True XLOC_009984
TCONS_00019908 lncRNA downstream 6163 29025301 ~ 29029007 (+) False XLOC_010003
TCONS_00019909 lncRNA downstream 6165 29025303 ~ 29025882 (+) True XLOC_010003
TCONS_00021956 lncRNA downstream 192224 29211362 ~ 29227112 (+) False XLOC_010005
TCONS_00019911 lncRNA downstream 193283 29212421 ~ 29227002 (+) False XLOC_010005
TCONS_00021957 lncRNA downstream 193311 29212449 ~ 29227112 (+) False XLOC_010005
TCONS_00019903 mRNA upstream 25560 28932038 ~ 28991376 (+) True XLOC_010001
TCONS_00019902 mRNA upstream 26424 28908478 ~ 28990512 (+) False XLOC_010001
TCONS_00019901 mRNA upstream 107947 28903774 ~ 28908989 (+) False XLOC_010001
TCONS_00019900 mRNA upstream 129777 28881235 ~ 28887159 (+) True XLOC_010000
TCONS_00019898 mRNA upstream 220071 28792158 ~ 28796865 (+) False XLOC_009999
TCONS_00019906 mRNA downstream 6154 29025292 ~ 29029283 (+) False XLOC_010003
TCONS_00019907 mRNA downstream 6154 29025292 ~ 29030674 (+) False XLOC_010003
TCONS_00019910 mRNA downstream 24675 29043813 ~ 29057849 (+) True XLOC_010004
TCONS_00019913 mRNA downstream 284833 29303971 ~ 29308947 (+) True XLOC_010007
TCONS_00019914 mRNA downstream 357613 29376751 ~ 29384935 (+) False XLOC_010008
TCONS_00019885 other upstream 628773 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019873 other upstream 1461696 27549842 ~ 27555240 (+) False XLOC_009979
TCONS_00019866 other upstream 1461800 27543308 ~ 27555136 (+) False XLOC_009979
TCONS_00019912 other downstream 197136 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019938 other downstream 983614 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 1061405 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019951 other downstream 1951363 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019955 other downstream 2615332 31634470 ~ 31634595 (+) True XLOC_010035

Expression Profile

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