RNA id: CI01000314_01501812_01512880.mRNA


Basic Information

Item Value
RNA id CI01000314_01501812_01512880.mRNA
length 2729
RNA type mRNA
GC content 0.39
exon number 6
gene id CI01000314_01501812_01512880
representative True

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 1501478 ~ 1514489 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATCATTAACCACAAGGTGTTACCCGAACATTACCAATCTCCGGATGAGCCTGGAACCCGGTTTAAAATAGTCCCAGACTGGAATTCATGTTGGAGATGGATTTTCCCCAACTGAAAGCAACTTGTACTGACATAATAATAATAATAATAATATGTTTAATTTATATAGCGCCTTTCCCAAGCTCAAGGACGCTTACAAAAGCAGTAACATAATAGACAGTCGATTTCACAATCAATTAATCAGTTAAGTGGACAGTAGACATTTGCCCAGTCCGGGGATAGAAATCTTATAATATATCTTAAAAGACTAGATAAAAATATGTCAGTGTCATTGTTCAGTCTCAAGATGCACACCAGTAATGTTTTTTTCTTTCTACGGCACATTTATAAAAGCTACTTAAATGTCCTGATTGAAATAAAGCCTAATCCTAGTTTAGTCTAAGCCCTATCTATGAAACCAGGCCTTTAAGTCCCGAGTTATCGTCTTGTAATTGATCTATAACATAGACATGATGAAGCCATGTGACACTGACAGCTCAAATGTTCTGTACTGGGATAACAGGTTTTCTTTGTGCAGTGTGGTTCAGCAGACGTCTGAGACATTGAAAATCTGGGATTTTTCACAAATTGAAGTTATATAAAACTTTTAAGATATTTAAGATTCAAGCAGGACAAATGTGTTGGAAGAAAGGTTAATTACTTTGTGCAATTTCTTTCATTAAGACGCTCTTTGGAACATCCTTAAATCACGCTCTGATAACAGGAAGAAGTTTGTTCAAAATCCATGTCACTTTGAGTGCATGTCATTGAAGCAAAAGAGGAACATACCAAATACTAAGAAATTCTGAAAATCACGTTAAAGGATTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCAATTTCATGTCGTTCCAAACCCGTAAGACCTTCGTTCACAAATTAAGATATTTTTGATGAAATCTACATTCTGTCCCTCCATTGACAGCCTGCGCAACTACCACTTTCAAGCCCCAGAAAGAAATTATGAAAGTAATCCATGTAACTCCAGTGGTTTAACCTCAATTTTATTGATTTATTGAATTTTATTTTATTATTTACAAAATATTAATCTCCAATGCGTGTTCATGCAATAGCGTCTGCTCTCGCGTCAACACATGCATGCATCGTGATGCTCTTGTGAACGAACGTTGGAGATAAAATAAAGTGATAAATTGTGTTTTTTTTTTGCACAAACAAAGCACTTTGTAAAAAAGCATCCCTTCATAAAACAGGTTAAACCACTGGAGTCACACGGATTACTTTAAATGATGCCCTCGCTACCTTTCTAGGGCTGGAAAGTGGTAGTCTCTTAGACTGTCAATGGAGGGACAGAAAGCTCTCAGATTTCGACAAAATTTTCTTAATTTGTGTTCTGAAGATGAACGAAGGTCTTACAGGTGTGGAAAGACATAAGGGTGAGTAATTAATGGCAGAAATTTTATTTTTGGATGATCAAACACTTTAATTGTCTGATTCAACTCAAATTTGGCAAAATAGACTCTTGGTTCCCCACTGTATTTGAGAAGAGACTCGTGTTTTTCAGCTGATTGAGCTGAAGTCAGATGGCAGCTACACAGAAACTGGCCTGTTATCGGTTACCTCCCCTGCCGACCATAGGGGAGATTATCAAACTGTACAACCTGAGAGCGGAGAAACAGCTTTCTCAGAACTTCCTCCTCGACATGAGACTCACAGATAAGATTGTCCGCCAGGCGGGAAACCTGAAGGATGCGCATGTGTGTGAGGTTGGACCTGGACCTGGGGGTCTCACCCGGTCTATTCTGAAAGCTGGAGCAGCAGACGTGTTAGTGGTGGAGAAGGACTCTCGCTTTTTGCCAGGATTACAGCTTTTGTCTGAGGCTGCCCCTGGAAGAATGAGGATCGCACATGGAGATATTCTCACATACAGACTGGAAAAAGGGTTTCCAGCTCACATAGCCAAGACATGGGAAGATGTGCCCCCCAACCTGCACATCATTGGGAACCTGCCCTTCAGTGTGTCCACTCCTCTCATCATAAAGTGGCTGGAGCAGATGTACAACAGAACTGGGTCCTTTATGTTTGGACGTACAAGGCTTACACTGACCTTTCAGAAAGAGGTGGCTGAAAGGTTAACAGCCAGCACAGGAAGCCGTCAGCGCAGCCGTCTCTCTGTCATGGCTCAGTATCTCTGCACTGTTAAAAGCTGTTTCACCATCCCAGGACGTGCCTTTGTTCCAAAACCAACCAGCGGTGGTGGTGTAACTGCCATCTGTGTTCGAGAGGCTCACCCTAGAGGACTGAAATCAGCACTAGCTGTGTGTGCCATCTTTGAGTTGGCTGTGCTATCAGCGGACTTCTTTTATTAAAGTCAACATGAAATCATTTAGTTTCTTAGAGATCAACCATAATCATCGTATTAGATTCGGGACATGAGTAGGTACTATACTCTAAGGATCAGATAATCTTGTCTAAACATTAGTTGGCCTTGTACATCCTTTTTATGCCTTGTAAATTCTTAATTTGTGAGGTTTTGCAGAAATTGTAAAAATGTCTTGTGATGGCTGTGAAAGCATTACATTATAGCTCTTTAATTATAGCCCTTAAATTAAGATTTCTTTACATTTAAAATGTAAGGAAATCTTACTTTTTAATGAAATGTATTATTTCTAGCAAATATGAAAATACATTGCTAATAATAAA

Function

GO:

id name namespace
GO:0043851 methanol-specific methylcobalamin molecular_function

KEGG:

id description
K15266 TFB1M; dimethyladenosine transferase 1, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512348 lncRNA downstream 138220 1362272 ~ 1363258 (-) True G446319
TU512303 lncRNA downstream 152673 1346114 ~ 1348805 (-) True G446275
TU512307 lncRNA downstream 158896 1340461 ~ 1342582 (-) True G446279
TU512331 lncRNA downstream 182303 1317955 ~ 1319175 (-) True G446302
TU512312 lncRNA downstream 229088 1271835 ~ 1272390 (-) True G446284
TU512448 lncRNA upstream 24532 1539021 ~ 1539402 (-) True G446414
TU512455 lncRNA upstream 42625 1557114 ~ 1557406 (-) True G446421
TU512395 lncRNA upstream 109535 1624024 ~ 1662795 (-) True G446363
TU512475 lncRNA upstream 174747 1689236 ~ 1689467 (-) True G446438
TU512476 lncRNA upstream 186186 1700675 ~ 1710504 (-) True G446439
CI01000314_01477362_01488717.mRNA mRNA downstream 12758 1477216 ~ 1488720 (-) True CI01000314_01477362_01488717
CI01000314_01234726_01235795.mRNA mRNA downstream 264474 1234164 ~ 1237004 (-) True CI01000314_01234726_01235795
CI01000314_01185737_01190407.mRNA mRNA downstream 311011 1184979 ~ 1190467 (-) False CI01000314_01185737_01190407
CI01000314_01160251_01175969.mRNA mRNA downstream 325509 1158404 ~ 1175969 (-) True CI01000314_01160251_01175969
CI01000314_01034963_01048224.mRNA mRNA downstream 453254 1034963 ~ 1048224 (-) True CI01000314_01034963_01048224
CI01000314_01516556_01536550.mRNA mRNA upstream 1641 1516130 ~ 1536861 (-) True CI01000314_01516556_01536550
CI01000314_01540030_01540389.mRNA mRNA upstream 25306 1539795 ~ 1540389 (-) True CI01000314_01540030_01540389
CI01000314_01566692_01584623.mRNA mRNA upstream 51909 1566398 ~ 1584623 (-) True CI01000314_01566692_01584623
CI01000314_01596442_01616381.mRNA mRNA upstream 81342 1595831 ~ 1616381 (-) True CI01000314_01596442_01616381
CI01000314_01617434_01617974.mRNA mRNA upstream 102542 1617031 ~ 1618177 (-) False CI01000314_01617434_01617974
TU512069 other downstream 571895 929273 ~ 929583 (-) True G446094
TU512388 other upstream 102301 1616790 ~ 1618284 (-) True CI01000314_01617434_01617974

Expression Profile