RNA id: CI01000314_01234726_01235795.mRNA



Basic Information


Item Value
RNA id CI01000314_01234726_01235795.mRNA
length 2440
RNA type mRNA
GC content 0.36
exon number 3
gene id CI01000314_01234726_01235795
representative True

Chromosome Information


Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 1234164 ~ 1237004 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAACCAATGTTGAGGATCATTTGATCCTTCAAACTTCGTAGACTAATTTTAGAAGTTATTCTAGCCTATTCTTGTAAACAGTTATCCTTTGGCTAACTGCTTTCTGCTAGTTTGGTCAGACTAGTTCTTAAAACACAGTATAACACAATGGCTACGTTTATGCAACTGGCCCAGGACTTACATCTCAAGCTTCACTCAGTCAGGTTTGCCAGGTCTATGGAACAAAACTAGCCCAATGGCCATAAAAAAAAAAAAAAATAGCCCAAAAACTGTCCAATGTGTTTTTTTTCCTTTAGCTGCACAATCGTTTCTGTTACAACAACTAAACACTTTCCACTTTCCACACTTGTGTAAAACACACAATAAACACAGTATGATAAAAAGATTTAAATTAAACTTATTCTTTAATAAAGACTTGCAAACAATATGCCTTTATATGACTTTCTGTGACATGCAACTTCTTGTCTCTAGTTGGACAATAAAAAGTTTGAATAATTGAAAGAGGTTGAAGGCTTTTGTCCTTTTGTTGCTTTTGTATTTTGTATTTTGTCATGCATTCCAAACTCCACATGGTTATTTTTACTTGCCATGTGTTGGCAACTTCCAGACTTTGTTGAACTCAGTTGAACTATTTCAGTATGTGAAGATCATTAATATAAAACAGGAAGAAGCTTTTTCTTAAGTATAGATGCTTTGTGAATTTCCAAGCACTCAACAGGTCAAACTATGTTTCTACAGTAAAATCAACCACACAGGTTTCAGACTGACTCAGAATGAGCTGCATCATACTCGAGACTGGTACTGAAACTGAAGCCATACACGACATGTGATGGAATATAAAGCAATTTTAAAAGGAATTAGCAATTTATTTTACCATGACATTTCACGAATATTCTGCTCTTGTACTTTTACATATTTAACACAGTCCGGTAGTTGCCTGACTGTGTTAAATATGTAGAAGTAGAAGACTTCGATATTACAGTAAATGATTAAAATGATGAATGTTTTTCAATATTAAGATAAGTTAAAGTCTTAATAGGAGGCTGGAGAACGTTTATTACATGTATTACATATATAACTATATAGGACATACATTCACAGGATGTGAACTAGGAGGTTCTTCATATTTAGTTGGGGGAGGTTTCAAGCACCAGCTTGAATATTCTAGGGGCACAGTCTAATTAGATCAGACCTTTCACTGAATAACTAATGAAAATGTTTCAAATGTTTGTTTTGTTCTGTTTTGGCTGGTGGAGTCTGATTGGTGTTTTTGGTGATTCATTGTCAGTGATGGAGGGAGATTCTGTCACTCTAAACACTAATCTTACTGAAATATGTGAAGACGATGACATACTGTGGAAATTTGGTGCTGAAAAGACTCTTATAGCTGAAATTAGTAGAGCTGCTGGAATCTTCTCCACATCTGATGTTCCTGATGGGAGATTCAGAGACAGACTGAAGCTGGACAATCAAACTGGATCTCTGACCATCACAAACACCAGAAATGAACATGCTGGAGTTTATAAACTAGAGATAAATGGAGTGAAACTGGCATCAAAAACATTCAATGTTTCTGTCAATGTGTTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTAAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGCTGAACAATCCCATCAGCAACCAGACTCAACATCTGGACATCACTCAACTCTGTTACACTTGTGCAGGTACGGCAGCGCTGATATATGTGATTACATACACCTTCACTTACATTAAGGACTGTCTCCTTCTCATCCTCCAGTCTCAGTCTCTATGATAGTGCTGATCTCTGCTGGATCTCTGTTAATTGTAGCTGGATTTGGGATCTTCTGGATCTGCAGGAAACGAAGAAAAACAGACCAAGAAGGCAAGTGTTACCTACTGCTTTAGGTAACACTTTAGTTTAGGGTCCAATTCTCACTATTAAAGTTGCTTATTAGCATGCATATTACTAGGATATTGGCTGTTTATTAGTACTTATTAAGCATATATTAATGCTTTATTCTGCATGACCATATTCTATATCCCTTAATACCTAAACCTAACCACTACCTTACTAACTATTAATAATCAGTAATTAGGAGTTTATTGAGGCAAAAGTTGTGGTTAATAGTTAGTTAATGGTGAGAATTAGACCCTAAACTAAAGTCTGACCCTGCTTTCAAACTGCTTTTAATCAATTAAGAATCAGAATCAGAATAGCCATAATTATCATTTCATCACAATTGATGTCTGTAGTTAACACCTCATTTATATGGGAAGAAAATGAAATGTAAATCACAATCTAACCGTTTTGCTTGCACAACAACAACAGAACTTAATTCTTGAACTGCATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU512127 lncRNA downstream 44119 1189685 ~ 1190045 (-) True CI01000314_01185737_01190407
TU512142 lncRNA downstream 92492 1141415 ~ 1141672 (-) True G446157
TU512141 lncRNA downstream 92893 1141055 ~ 1141271 (-) True G446156
TU512137 lncRNA downstream 95237 1138570 ~ 1138927 (-) True G446152
TU512135 lncRNA downstream 97440 1136470 ~ 1136724 (-) True G446150
TU512310 lncRNA upstream 26974 1263978 ~ 1264429 (-) True G446282
TU512313 lncRNA upstream 34799 1271803 ~ 1272390 (-) False G446284
TU512312 lncRNA upstream 34831 1271835 ~ 1272390 (-) True G446284
TU512331 lncRNA upstream 80951 1317955 ~ 1319175 (-) True G446302
TU512307 lncRNA upstream 103457 1340461 ~ 1342582 (-) True G446279
CI01000314_01185737_01190407.mRNA mRNA downstream 43697 1184979 ~ 1190467 (-) False CI01000314_01185737_01190407
CI01000314_01160251_01175969.mRNA mRNA downstream 58195 1158404 ~ 1175969 (-) True CI01000314_01160251_01175969
CI01000314_01034963_01048224.mRNA mRNA downstream 185940 1034963 ~ 1048224 (-) True CI01000314_01034963_01048224
CI01000314_00961406_01033528.mRNA mRNA downstream 200636 961118 ~ 1033528 (-) True CI01000314_00961406_01033528
CI01000314_00931320_00933166.mRNA mRNA downstream 299843 930773 ~ 934321 (-) True CI01000314_00931320_00933166
CI01000314_01477362_01488717.mRNA mRNA upstream 240212 1477216 ~ 1488720 (-) True CI01000314_01477362_01488717
CI01000314_01501812_01512880.mRNA mRNA upstream 264474 1501478 ~ 1514489 (-) True CI01000314_01501812_01512880
CI01000314_01516556_01536550.mRNA mRNA upstream 279126 1516130 ~ 1536861 (-) True CI01000314_01516556_01536550
CI01000314_01540030_01540389.mRNA mRNA upstream 302791 1539795 ~ 1540389 (-) True CI01000314_01540030_01540389
CI01000314_01566692_01584623.mRNA mRNA upstream 329394 1566398 ~ 1584623 (-) True CI01000314_01566692_01584623
TU512069 other downstream 304581 929273 ~ 929583 (-) True G446094
TU512388 other upstream 379786 1616790 ~ 1618284 (-) True CI01000314_01617434_01617974

Expression Profile