RNA id: CI01000314_00931320_00933166.mRNA


Basic Information

Item Value
RNA id CI01000314_00931320_00933166.mRNA
length 2914
RNA type mRNA
GC content 0.44
exon number 2
gene id CI01000314_00931320_00933166
representative True

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 930773 ~ 934321 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATCCTGAAATTGTTTTTTCGTTGTCTTCAGCCTGCGCAGCAAACCACCAGCAGCTAAATATCTTGGAGAGTCAAACAAAGTGTATAAATGTTAGGCTACTTTGTTTAATGAAGGCAATCAAATCTTGCCACTGAGCTCTGCAGAATCAACACCGATGACCTGCTCTTACATTAGCAAACTGTGTACCGCTATTAGCTACATAAACTAGAGCTCAGGTAAACAAATTAATTCAAAACAGGCAAAAACATTTACACGTTTTGATCTGGCCCATATTATTGTCGTCCTTGATTCTTTCATATTTTATCTTTTTTATAGATTTATAGGCTGTATTTTTTTTTTTTAAATACAGCCAACTGGCCTTTTACAAATACTTTTTAATGATTTAATGATCAGTTAAAAATTTTGTTTATTGGAAATAATTGGGCTTTTTGAAAGAAAAAAGAACTAAATGGGGGGAAAAAAACCATAACAATGAATAAAACAAAGAGATTATGCAATTAAAATCGATTACAGTCGACTGTTCATAATAAATGCTGCTTGTGAATTACGAAAAAAAAAAAAAAAAAAAAAAACAACAACACTTGGACAGTTGATTAATCTGAATAAAGACCATATACTTGAATCCAGAGCTGTTGGCATTCTTAAATCCGTTCTTCCCAATTTTATCTGGATGTGATTTCAAACCACTCCTCTCACAGCAGTCCAAACTTCTATTCCCCCCTTTCTCCCGCTGGAATACAATAAGATTAGGATATAATGAATCTTTTCAAATGGGGCTGCTCTTTTCAAGCTGCGCAGGTGTACAATAGGGGGGCAAATGGAGAAGTCTCACGCCTAGGTGTGAGCAGATTATTCAAATAGGGGCCGAGTGAAGCAGTAGGGATTGGAGGCTCGCCCGGGCGCACAGAGCTATATCACAGCGTTAAGAGCCAGCAGCAGGCGTCATTTCAACTGCAGTCATCTCAGAAACACACACACACACACATGCGCCAGCTCTTGACAGGAGGAGAGCACAACGACGACACGAGTGTATCCCGTGGTCCCCAACAACCACCTTTGGCTGCCAAAGGACACACAATACCAGCATTTCTCGTGTGGGGAAGCGTTTTGAAAAGTAGACCAAGTTTTTTCCAGGATGCTCGGTGCTGTCAAAATGGAGGGACACGAACACGCAGCAGACTGGAGCGCTTACTACGGAGAGCCCGAGTGTTACACTTCGGTCAGCAACATGAACACTGGACTGGGAATGAACTCCATGAACACTTACATGACTATGTCTGGAATGAGTTCGACTGCAAACATGACAGCGGCAAACAGCATGAACATGTCCTATGTCAACACGGGTATGAGTCCTTCAATGACAGGCATGTCCCCCGGTGCTGGAGCGATGGCCGGCATGGGTGCGGGTATGACGGGCATGAGCGCAGCCCTGAGCCCGACCATGAGCCCCATGGCAGCGCAAGCGCCCTCCATGAATGCCTTGACCTCGTACAGCAATATGAACGCTATGAGCCCCATGTATGGCCAGTCGAACATAAACAGATCGAGGGACCCGAAGACCTACCGGAGGAGCTACACGCACGCCAAGCCACCCTACTCGTACATTTCTCTAATAACCATGGCCATCCAGCAGTCACCCAGTAAGATGCTGACCCTCAGTGAGATCTATCAGTGGATAATGGACCTTTTCCCTTTTTACCGACAGAACCAGCAGCGCTGGCAGAACTCTATCCGCCACTCGCTGTCCTTCAACGACTGTTTCCTGAAAGTTCCGCGCTCCCCGGATAAGCCAGGCAAAGGTTCGTTTTGGACCCTTCATCCCGATTCCGGGAACATGTTCGAAAACGGCTGCTATCTGAGAAGGCAAAAGCGCTTCAAGTGCGACAAGAAACTAAGCAAGGAGCCGGGTCGGAAAACATCGGAGGGCGGATCGAACAGCAGCTCCGAGAGCTGCAACGGGAACGAATCTCCTCATTCCAACTCGTCCAGCAACGAGCACAAAAGATCCCTGTCTGACATGAAGTCGGGTCAGGGTCTGAGCCCGGAGCACGCAGCCTCGCCGACCTCCCAAGCGCAGCATCTCCTAGCTCAACACCACTCTGTTTTGACGCATGAAGGACACCTGAAGCCAGAACATCACTATTCCTTCAATCACCCCTTCTCCATCAACAACCTCATGTCCTCGGAGCAACAGCATCACAAAATGGACCTAAAGACATATGAGCAAGTGATGCATTACGGTTACGGCTCTCCGATGGCCGGCGCGTTATCCATGGGTTCCATGGCCAGCAAAGCGGGCCTGGATTCGCCAGACACATCCTATTACCAAGGTGTGTACTCCAGGCCCATCCTGAACTCTTCCTAAACCCTCACGGACCTTGTGACAATTTGTACATTTGTAAAATGGTTGTGTATATGTATTCTGATTTTTGACGTTTCCCGTTAATTTAGATGTTCATTAGTAATTATTTTGTAAAAGACATGTTGACAATGTGACGAACTCTTCGAGGCGGCTTTTGAAAATGGACCAAAATGACACCGAAGGACTGCGGACGGATTGAACTTCTTCAATCACCTGTGTAAACTTATTTATGGCTTGTAAATGTGTATTCTTGTAGTTGATGACAAGAACAGAATCTATATTAAAGTGTTATTTGGAATTTTTCTCAATTCTGATTTTCACTCATTTTTTTTGTGCTATTATGTTGTCAACAACAACAAAAATAATAAGTGTCATTTTGCTCAACGAATTATCAATGCATTTGCACATATGAACCACTTGTTACTTGTGACGCTACACATTTATATTCAATATGCCACAGTTAAATTATTTTGATTGAATTAATCTGATTGAAATGTTCTTGAATTTCTTTGCAATTTCAACCCTGAACTAAATTAATATCAACAATAAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K08035 FOXA2, HNF3B; forkhead box protein A2, hepatocyte nuclear factor 3-beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512066 lncRNA downstream 1108 929534 ~ 929665 (-) False G446094
TU512067 lncRNA downstream 1190 929534 ~ 929583 (-) False G446094
TU512068 lncRNA downstream 1190 929534 ~ 929583 (-) True G446094
TU511930 lncRNA downstream 22399 908171 ~ 908374 (-) True G445985
TU511848 lncRNA downstream 127611 802786 ~ 803162 (-) True G445904
TU512073 lncRNA upstream 4084 938405 ~ 938683 (-) True G446098
TU512077 lncRNA upstream 10328 944649 ~ 944886 (-) True G446102
TU512082 lncRNA upstream 20890 955211 ~ 955437 (-) True G446107
TU512062 lncRNA upstream 118196 1052517 ~ 1059941 (-) True G446092
TU512133 lncRNA upstream 199572 1133893 ~ 1134188 (-) True G446148
CI01000314_00916594_00919809.mRNA mRNA downstream 10259 916154 ~ 920514 (-) False CI01000314_00916594_00919809
CI01000314_00705124_00706620.mRNA mRNA downstream 224122 704768 ~ 706651 (-) True CI01000314_00705124_00706620
CI01000314_00660252_00661614.mRNA mRNA downstream 268473 659838 ~ 662300 (-) True CI01000314_00660252_00661614
CI01000314_00357634_00433275.mRNA mRNA downstream 497414 356057 ~ 433359 (-) True CI01000314_00357634_00433275
CI01000314_00345636_00351713.mRNA mRNA downstream 576931 345209 ~ 353842 (-) True CI01000314_00345636_00351713
CI01000314_00961406_01033528.mRNA mRNA upstream 26797 961118 ~ 1033528 (-) True CI01000314_00961406_01033528
CI01000314_01034963_01048224.mRNA mRNA upstream 100642 1034963 ~ 1048224 (-) True CI01000314_01034963_01048224
CI01000314_01160251_01175969.mRNA mRNA upstream 224083 1158404 ~ 1175969 (-) True CI01000314_01160251_01175969
CI01000314_01185737_01190407.mRNA mRNA upstream 250658 1184979 ~ 1190467 (-) False CI01000314_01185737_01190407
CI01000314_01234726_01235795.mRNA mRNA upstream 299843 1234164 ~ 1237004 (-) True CI01000314_01234726_01235795
TU512069 other downstream 1190 929273 ~ 929583 (-) True G446094
TU512388 other upstream 682469 1616790 ~ 1618284 (-) True CI01000314_01617434_01617974

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024220 True 1772 mRNA 0.48 2 NC_007128.7 42565998 ~ 42568498 (-)