CI01000314_00931320_00933166 (FOXA2)


Basic Information

Item Value
gene id CI01000314_00931320_00933166
gene name FOXA2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 930773 ~ 934321 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000314_00931320_00933166.mRNA
ATATCCTGAAATTGTTTTTTCGTTGTCTTCAGCCTGCGCAGCAAACCACCAGCAGCTAAATATCTTGGAGAGTCAAACAAAGTGTATAAATGTTAGGCTACTTTGTTTAATGAAGGCAATCAAATCTTGCCACTGAGCTCTGCAGAATCAACACCGATGACCTGCTCTTACATTAGCAAACTGTGTACCGCTATTAGCTACATAAACTAGAGCTCAGGTAAACAAATTAATTCAAAACAGGCAAAAACATTTACACGTTTTGATCTGGCCCATATTATTGTCGTCCTTGATTCTTTCATATTTTATCTTTTTTATAGATTTATAGGCTGTATTTTTTTTTTTTAAATACAGCCAACTGGCCTTTTACAAATACTTTTTAATGATTTAATGATCAGTTAAAAATTTTGTTTATTGGAAATAATTGGGCTTTTTGAAAGAAAAAAGAACTAAATGGGGGGAAAAAAACCATAACAATGAATAAAACAAAGAGATTATGCAATTAAAATCGATTACAGTCGACTGTTCATAATAAATGCTGCTTGTGAATTACGAAAAAAAAAAAAAAAAAAAAAAACAACAACACTTGGACAGTTGATTAATCTGAATAAAGACCATATACTTGAATCCAGAGCTGTTGGCATTCTTAAATCCGTTCTTCCCAATTTTATCTGGATGTGATTTCAAACCACTCCTCTCACAGCAGTCCAAACTTCTATTCCCCCCTTTCTCCCGCTGGAATACAATAAGATTAGGATATAATGAATCTTTTCAAATGGGGCTGCTCTTTTCAAGCTGCGCAGGTGTACAATAGGGGGGCAAATGGAGAAGTCTCACGCCTAGGTGTGAGCAGATTATTCAAATAGGGGCCGAGTGAAGCAGTAGGGATTGGAGGCTCGCCCGGGCGCACAGAGCTATATCACAGCGTTAAGAGCCAGCAGCAGGCGTCATTTCAACTGCAGTCATCTCAGAAACACACACACACACACATGCGCCAGCTCTTGACAGGAGGAGAGCACAACGACGACACGAGTGTATCCCGTGGTCCCCAACAACCACCTTTGGCTGCCAAAGGACACACAATACCAGCATTTCTCGTGTGGGGAAGCGTTTTGAAAAGTAGACCAAGTTTTTTCCAGGATGCTCGGTGCTGTCAAAATGGAGGGACACGAACACGCAGCAGACTGGAGCGCTTACTACGGAGAGCCCGAGTGTTACACTTCGGTCAGCAACATGAACACTGGACTGGGAATGAACTCCATGAACACTTACATGACTATGTCTGGAATGAGTTCGACTGCAAACATGACAGCGGCAAACAGCATGAACATGTCCTATGTCAACACGGGTATGAGTCCTTCAATGACAGGCATGTCCCCCGGTGCTGGAGCGATGGCCGGCATGGGTGCGGGTATGACGGGCATGAGCGCAGCCCTGAGCCCGACCATGAGCCCCATGGCAGCGCAAGCGCCCTCCATGAATGCCTTGACCTCGTACAGCAATATGAACGCTATGAGCCCCATGTATGGCCAGTCGAACATAAACAGATCGAGGGACCCGAAGACCTACCGGAGGAGCTACACGCACGCCAAGCCACCCTACTCGTACATTTCTCTAATAACCATGGCCATCCAGCAGTCACCCAGTAAGATGCTGACCCTCAGTGAGATCTATCAGTGGATAATGGACCTTTTCCCTTTTTACCGACAGAACCAGCAGCGCTGGCAGAACTCTATCCGCCACTCGCTGTCCTTCAACGACTGTTTCCTGAAAGTTCCGCGCTCCCCGGATAAGCCAGGCAAAGGTTCGTTTTGGACCCTTCATCCCGATTCCGGGAACATGTTCGAAAACGGCTGCTATCTGAGAAGGCAAAAGCGCTTCAAGTGCGACAAGAAACTAAGCAAGGAGCCGGGTCGGAAAACATCGGAGGGCGGATCGAACAGCAGCTCCGAGAGCTGCAACGGGAACGAATCTCCTCATTCCAACTCGTCCAGCAACGAGCACAAAAGATCCCTGTCTGACATGAAGTCGGGTCAGGGTCTGAGCCCGGAGCACGCAGCCTCGCCGACCTCCCAAGCGCAGCATCTCCTAGCTCAACACCACTCTGTTTTGACGCATGAAGGACACCTGAAGCCAGAACATCACTATTCCTTCAATCACCCCTTCTCCATCAACAACCTCATGTCCTCGGAGCAACAGCATCACAAAATGGACCTAAAGACATATGAGCAAGTGATGCATTACGGTTACGGCTCTCCGATGGCCGGCGCGTTATCCATGGGTTCCATGGCCAGCAAAGCGGGCCTGGATTCGCCAGACACATCCTATTACCAAGGTGTGTACTCCAGGCCCATCCTGAACTCTTCCTAAACCCTCACGGACCTTGTGACAATTTGTACATTTGTAAAATGGTTGTGTATATGTATTCTGATTTTTGACGTTTCCCGTTAATTTAGATGTTCATTAGTAATTATTTTGTAAAAGACATGTTGACAATGTGACGAACTCTTCGAGGCGGCTTTTGAAAATGGACCAAAATGACACCGAAGGACTGCGGACGGATTGAACTTCTTCAATCACCTGTGTAAACTTATTTATGGCTTGTAAATGTGTATTCTTGTAGTTGATGACAAGAACAGAATCTATATTAAAGTGTTATTTGGAATTTTTCTCAATTCTGATTTTCACTCATTTTTTTTGTGCTATTATGTTGTCAACAACAACAAAAATAATAAGTGTCATTTTGCTCAACGAATTATCAATGCATTTGCACATATGAACCACTTGTTACTTGTGACGCTACACATTTATATTCAATATGCCACAGTTAAATTATTTTGATTGAATTAATCTGATTGAAATGTTCTTGAATTTCTTTGCAATTTCAACCCTGAACTAAATTAATATCAACAATAAA

Function

symbol description
foxa2 Enables transcription cis-regulatory region binding activity. Acts upstream of or within axial mesoderm morphogenesis; endoderm development; and nervous system development. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; digestive system; endoderm; mesoderm; and swim bladder. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human FOXA2 (forkhead box A2).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K08035 FOXA2, HNF3B; forkhead box protein A2, hepatocyte nuclear factor 3-beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000314_00931320_00933166.mRNA True 2914 mRNA 0.44 2 930773 934321

Neighbor

gene id symbol gene type direction distance location
CI01000314_00916594_00919809 NA coding downstream 10259 916039 ~ 920514 (-)
CI01000314_00705124_00706620 NKX2-2, NKX2.2A, NX22A coding downstream 224122 704768 ~ 706651 (-)
CI01000314_00660252_00661614 NKX2.1A, NKX2.4A, NKX2-4 coding downstream 268473 659838 ~ 662300 (-)
CI01000314_00357634_00433275 RALGAPA2 coding downstream 497414 356057 ~ 433359 (-)
CI01000314_00345636_00351713 NA coding downstream 576931 345209 ~ 353842 (-)
CI01000314_00961406_01033528 PRKD3 coding upstream 26797 961118 ~ 1033528 (-)
CI01000314_01034963_01048224 MOCS3 coding upstream 100642 1034963 ~ 1048224 (-)
CI01000314_01160251_01175969 NA coding upstream 224083 1158404 ~ 1175969 (-)
CI01000314_01185737_01190407 NA coding upstream 250658 1184979 ~ 1190467 (-)
CI01000314_01234726_01235795 NA coding upstream 299843 1234164 ~ 1237004 (-)
G445985 NA non-coding downstream 22399 908171 ~ 908374 (-)
G445904 NA non-coding downstream 127611 802786 ~ 803162 (-)
G445889 NA non-coding downstream 152859 777677 ~ 777914 (-)
G445853 NA non-coding downstream 212853 717649 ~ 717920 (-)
G446098 NA non-coding upstream 4084 938405 ~ 938683 (-)
G446102 NA non-coding upstream 10328 944649 ~ 944886 (-)
G446107 NA non-coding upstream 20890 955211 ~ 955437 (-)
G446092 NA non-coding upstream 118196 1052517 ~ 1059941 (-)
G446148 NA non-coding upstream 199572 1133893 ~ 1134188 (-)
CI01000314_01617434_01617974 CGA other upstream 682469 1616790 ~ 1618284 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012311 foxa2 coding NC_007128.7 CM002901.2 42565998 ~ 42568498 (-)