RNA id: CI01000314_00345636_00351713.mRNA


Basic Information

Item Value
RNA id CI01000314_00345636_00351713.mRNA
length 3186
RNA type mRNA
GC content 0.42
exon number 6
gene id CI01000314_00345636_00351713
representative True

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 345209 ~ 353842 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGAGATGGAGGGGCCTCCAGCGGGCTACACCATCACTCAGCTCTAATTGGATGGGTTTTGGTGAAATGACCACCAGCGCTTGGCATGGGGCACTGCAATCCACCCCTGTGCCCTGCGCTGTCCCACACCCCTGCGCTCTATTGTCCGTGTTTGTGTATGCAGGTGAGTGTTCGGAGCTAATCTATGGATCTCTGTCCCGCCCGACTCTGGGATTATGCTTTTCCAAAGGGCTTAGCTTGAATGGAGAGTCCTCACTCCTGCTGACACCTTTCACGTAGCGCATAATGCGTCGTGATTATTGATTCATCAGCTGCTGCGAGTTTGAAGTGGGCCATGCTGAAGCCCTGTGCAGGGAAACTTAGGATATATTACAAGATCAATAAATGAAGAAAATTCATCTTCAGCTGATACAAGAGGCTTTTGTTCCTTCATGTTCTCATTCTTGTTGACATTCTTTGTATTGCTTAGGAACATAATGGGCTTTTTTAAAGGTATTGTTCACCCAAAAATGAAAATTGAATCACTATTTACCCACTCTGGTGTTGTTCTAATGCAGTATGACCTTCTTTCTTTTTGACATCACAGAAGGATACATTTTTTAAATTGTCCTGCTTAAGCTCATCCATATATTAGGTAAAGTCAAATCACCTTTATTTATATAATGCTTTATACAATACAGATTGTTTCAAAGCAGCCTCACAGTAATAAACAGGAAAATAACAGAATCAATGATGCAAACATCATCAAATATGAGGCAAATTCAAATTATGCTGTAAAACAGCTCTAAAAGACAATAGTGTCATTATTCAGCTCAAGTCATTTCAGTGTTGATTCAGTTCAGTTCAATAACTGTAAAATTCCTCAATTATGAAAAGTTCGATTCAGTTATAAGCCGCTCTACCGAAGACAATAGTGTCATTATTCAGCTTGAGTCAGTTCAATTTTGAATCATTTCAGTTCATCAATAAGAAAGCGCATGTTGCAACATTTGTCAATTATGAAATGAATTTGATTGATTTGATTCAACAGAAGACAACAGTGTCATTATTAAGCTCAGTTCAGTTCTACATAAGCAGTGAGTAGTGACAAACTTCTAGCTTTGACAAAAAAGATGCAAAAATTTGACTTGCAGGTGTTCTGCATATACTAGGGTTTGATGAAATACAAACTGAAATTCTATTTATCAAAAATTGTCATGAAGCTTGATGTTGCTGTAGCTTATGACCATTTTTGTTAGTTGGTGAACCTTAACAGCCCCATCAGTTCAACTCCCTGATAAGTTAATCGCCCTCTCAACTCTTTTCTCTGCATTTGGGAATAACAAACAGTTTGGCATTTCTTGTTGGCAGTTGGTGGGCAGGATGACCCAAAAAACATATTGTACGTGACTTTTTGGTGCTACCTCTGCAAACGCATTGGTGCATATTGAGTCAAGGCCTGTGCACATTAACACAAATGTTGGCGTGAAAATTCGGTCTGATTTTAACAGACCAATGCATAAAAATGGCAGACAGGCTGAATGCAGATTCACTCTTTGACAGTAGATGGCACTTTTAGAAAAACAGAAATGCCCTGGTTACTCAGGGAATCCAAGCATTACTTCATTTTTCATTTCTGACACTCACTTGTCATGGAGAAGAAAGTAAGTCCAACATTATTTACATGTTTTCAAACAGCTGTTCCGATTTTTGTATTAGCTATGGTGTTTATCAAATAACACCAAAGTACAAAGACAAAAGAGCTGTTCTGGATTCTTCCTCTGTTGTCGCTTAGCAAAATACTCTGTTTGTGAGCAAGTCATGGTTTTATGTAACAGCAGTGGCTCTGGACATGTGACCAGAAGCACAAATCCTATTGGTCGTCCAGTTTTATTTGCTGTACGATGGAAAAGAGATTAAAACAGCTCTATTTACAGAACGGCTAAATATTTACCGCACCGCATTTGTCTTCAGATGCTGTATGGTGATGGTTTGTGCATTATCCTTGTTTCGCTTCCTTGATATGCAACCACAATGTCCTTTTGCAATACAGGACTAAGACTGCTGAAATCTCTCCACTCTCCACTGTCTATCAGCTGTCCATGGGAATGGCATCCCGTATCATTATTGAGTTATTTAGAGTTGAAAAATGGGCAGCTGGTCTAACACTTTCACAACTGAGCCCTTTCTTGGCCTAAGATCCATCTCTAGGCACCAATCAATAGCCATAATCTGTTCCTACCCACCGTCAGTCATGCGAGATTCAGCTTTTAGCACCCGTGATGGTTGGAGGATATTTGAGGTCTGCTTTCCTGGGTCTCTCAACTTGCCAGCTGTTACTGGAGGTCCTGACAAAGTCCAGAGTGACGTTACTAAACCGCCTGCTGCCAACTCTGGGAGAAAGCTGTTAGCCCTCTCAGGTTATCCAAATGGATGTCGCTTCGCTTTTTGTTTGTCGCCCTTGTACACAATGAACGCGTTCGCATTGATGAGCCGTGTGTGGGTTTTGTCTCTGGCGCGCTTTGTCTATAGTCTTGTAAAGGGAGTGATAATGAGCAATTCTGGCAAGCTTCGGCACTTAAGTGTGGGAGTATTTGAATGTACGAGAAATGAAATTGCCTGCGGCAGCGGAGGTATTCTTCGCATGATAGTCTTTCTCAAAAGAGTTGTGGTGTCTCAAGGCTCGTGTTCGTTTGCGCGATTGCGTGCCAGGATGTGGACACGTCTGCAGGAGAGGGGCTTTTCGTGCCTTTGTGTTTGCGTCTTCACGCATGCCTGATTCTCCTCTCACTAATCGTCACGGTCGTTCAGCACCGGCCCTCGTTAAAGCTCATATCTCATTCGGGGGGTTTCTTTGTCTGAGGCCGTTGCTGATAAGAATACTGCCTCTAGGGCTCTTGTGATATTGAAATCCTCCAATGGTGAGAAAGAGTCTTCAATCGGCGAATATCAGCAGTGCCCTGATTACCATTCAATCTCCCAGAGCTCGGTCACTCATTTCTGGCTCTCTCGGTCTGAATGAAGACTGCCACCGCTGCTTATCCTCTCTTATGCCATACATATCCAATTCTTCCCTAAATGTCACTCAAATGTCAGCCGCCGTATAACCCGCCAACTGTATTGTACGTCCCGTGATACGTTCATTTTTCCTTTTGTGTCGTGTTATTTCTGTAAAGCTGCTGCGGCCCTAATTTAGCAATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511535 lncRNA downstream 31571 311391 ~ 313638 (-) False G445633
TU511536 lncRNA downstream 31953 311391 ~ 313256 (-) False G445633
TU511534 lncRNA downstream 31953 311545 ~ 313256 (-) True G445633
TU511538 lncRNA downstream 37287 305061 ~ 307922 (-) True G445634
TU511567 lncRNA downstream 64045 268460 ~ 281164 (-) True G445662
TU511598 lncRNA upstream 150598 504440 ~ 505143 (-) True G445692
TU511625 lncRNA upstream 178297 532139 ~ 532441 (-) True G445719
TU511636 lncRNA upstream 190983 544825 ~ 545024 (-) True G445730
TU511637 lncRNA upstream 192318 546160 ~ 546489 (-) True G445731
TU511641 lncRNA upstream 195664 549506 ~ 549842 (-) True G445735
CI01000314_00328906_00331255.mRNA mRNA downstream 13392 328599 ~ 331817 (-) True CI01000314_00328906_00331255
CI01000314_00314539_00325075.mRNA mRNA downstream 19259 314228 ~ 325950 (-) True CI01000314_00314539_00325075
CI01000314_00003811_00027858.mRNA mRNA downstream 317351 3783 ~ 27858 (-) True CI01000314_00003811_00027858
CI01000314_00357634_00433275.mRNA mRNA upstream 2215 356057 ~ 433359 (-) True CI01000314_00357634_00433275
CI01000314_00660252_00661614.mRNA mRNA upstream 305996 659838 ~ 662300 (-) True CI01000314_00660252_00661614
CI01000314_00705124_00706620.mRNA mRNA upstream 350926 704768 ~ 706651 (-) True CI01000314_00705124_00706620
CI01000314_00916594_00919809.mRNA mRNA upstream 562312 916154 ~ 920514 (-) False CI01000314_00916594_00919809
CI01000314_00931320_00933166.mRNA mRNA upstream 576931 930773 ~ 934321 (-) True CI01000314_00931320_00933166
TU512069 other upstream 562288 929273 ~ 929583 (-) True G446094
TU512388 other upstream 1262948 1616790 ~ 1618284 (-) True CI01000314_01617434_01617974

Expression Profile