RNA id: CI01000314_00003811_00027858.mRNA


Basic Information

Item Value
RNA id CI01000314_00003811_00027858.mRNA
length 2820
RNA type mRNA
GC content 0.49
exon number 24
gene id CI01000314_00003811_00027858
representative True

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 3783 ~ 27858 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCCAGCAGATTCTACAGTGGTCGGCCTTTTTATTTTCTATTTTACCATTTTTGGTTATTTATCTACGTGTGTTTGCTAGTACATAAGAGCTCCAGTATGCATGACGCATATGAACCGGTTCCTATTCTGGAGAAATTACCCCTGCAGATTGACTGTCTGGCGGCATGGGATGATTGGCTCCTTGTCGGGACCAAACCGGGTCATCTCCTTCAGTACAGGATCAAGAAAGATGCAGGCACAAATAGGTTTGAAGTTACATTAGAGAAATCCAATAAGAACTTCTCAAAGAAGATTCAGCAGCTGTTTGTGGTTTCGCAGTACAAGATTTTGGTTAGTCTTTTGGAAAATAACATCCACGTTCATGACTTGCTGACGTTCCAGCAGATAACTGTGGTGTCCAAAGCCAGAGGGGCCACACTGTTTGCCTGTGACCTGCAGAAGTCCAGCTCAGGTGAGGCCAAACTGCGCATGTGTGTTGCAGTCAAGAGGAAGATTCAGCTGTATTACTGGAAGGACAGAGAATTCCATGAATTACAGGGAGATTTTGCCGCTCCAGACATTCCCAAGTCCATGGCTTGGTGTGAGAACTCTATATGCGTGGGTTTCAAACGAGACTACTATCTGATTCGGATGGACGGACGTGGCACAGTCAAGGAACTGTTCCCCACGGGGAAACAGCTGGAACCATTGGTGGCCCCATTGGCTGATGGGAAGGTAGCGGTGGGTCAGGATGACCTCACGGTTGTTTTGAACGAAGAAGGTGTCTGCACTCAGAAATGTGCCCTTAACTGGACAGACATTCCTGTTGCGATGGAGCACCAGCCACCGTACATCATTGCAGTGTTGCCACGGTATGTGGAGATCCGCACCCTCGAGCCCAGACTGCTGGTGCAGAGCGTAGAGCTGCAGAGACCACGTTTCATCACCTCTGCTGGATCAAATGTTGTCTATGTCGCTAGCAATCATTTTGTTTGGCGTCTGGTGCCGGTCTCTATAGCCAGCCAGATACGGCAGCTGCTACAGGACAAACAGTTTGAACTGGCGCTTCAGCTAGCGAAAATGAAGGATGATTCAGATGCAGACAAGAGACAACAGATCCATCACATTCAGAACCTGTATGCCTTCAACCTGTTCTGTCAGAAGCGCTTTGACGACTCCATGCAGGGGTTTGCCAAGTTAGGCACAGATCCCACTCATGTTATAGGACTGTATCCAGACCTCCTTCCCTCTGATTACCGCAAACAGCTGCATTACCCCAACCCTCTGCCCGCACTGTCTGGAGCCGAGCTGGAGAAAGCCCACCTAGCACTCATAGACTACCTGACACAGAAACGCAGTCATTTAGTGAAGCAGCTAAATGACTCTGACCCCTCTACCACCTCCCCTCTCATGGAGGGAACCCCCACCATCAAGAGCCGCAAGAAACTCCTTCAGATCATCGATACCACCCTGCTCAAATGTTACCTCCATACCAATGTAGCCTTGGTGTCGCCTCTCCTGCGCCTGGAGAACAACCACTGTCACATAGAGGAGAGCGAGTACGTGTTAAAGAAAGCTCATAAATACAGCGAACTCATCATCCTCTACGAGAAGAAAGGCCTTCACCAGAAAGAAGAGAATACTGATGAGGACCAGGCCGGTTCAATTGACTTACAGAAGTGTGATTGTCCAGCTCTGCAGGTTCTGCTGGATCAGTCTACTAAAGCCAACTCTCCCCTGAAGGGACATGAGAGGACTGTACAGTATCTTCAGAGGCTGGGTGTGGAGAACCTGGGCATCATATTTGAGTTTTCACCGTGGGTTCTGAAGATTTGTCCCGAGGATGGACTGAAGATCTTCACTGAGGACCTGACAGAGGTGGAGACTCTACCCAGGGATAAGGTATTGAACTTCCTGAAGGAGGGGTTCAAGGAGCTGGCCATCCCATACCTGGAACACATCATTTACATGTGGGAAGAGACACGGCCCGAGTTCCACAATGTTCTGATCCAGCTGTACCTGGAGAAGGTGCAAGGCCTCATGAAAGTGTACCTCAACTCACTGCCTGAAGGTGTTTCAGCTGTAGCTGCAGGAAAGGAGGCGGGAGAGCTGGGAGAATTCAGGAACAAGCTTCTGACATTTCTGGAAGTTTCCAGCAGCTATGAGCCAGAGAGACTCATCAGTGATTTCCCATTTGATGGTCTGTTGGAGGAGAGGGCTCTGCTCTTGGGTCGTATGGGGAAACATGAGCAGGCTCTCTTCATCTATGTTCACATTCTGAAAGACACGCGTATGGCTGAAGAGTACTGCCACAGTCATTATGATCTAACAGCAAACGGCAATAAAGATGTGTATCTGTCCCTCCTGCGCATGTATCTGTCTCCTCCGGATGTGCACTTCCTCGGCCCCATTAAGATGGAGTTATGTGAGCCACAAGCGAACCTCCAGGCGGCCCTGAACGTTCTTCAGCTCCACCACAGCAAACTGAACACCACCAAAAGAGATACAATTCCTGATCAGAACTCTCCAAACCACATGGCGACACTCATGGTGTTTTTCTCTGTCTTTCATAAGGCCATAAACCTGCTGCCAGCCAACACACAGATCCGCGAGATCAAGGTCTTCCTGGAGAATGTGTTGGAGGAGAAGGCTGGAAGGAAGCGCTTTGACCAGGTCATGAAGAGCCTCCTACAGGCTGAGTTCCTGCGGGTGCAGGAGGAACGTATCTTTCACCAGCAGGTGAAGTGCGTCATCACAGATGAAAAGACCTGCAGAGTGTGCAAGAAGAAGATCGGAAATAGGTGTGCCTAGCATTATTGCATTTCATTTACGTAATACA

Function

GO:

id name namespace
GO:0030897 HOPS complex cellular_component

KEGG:

id description
K20183 VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511217 lncRNA upstream 33519 61377 ~ 63251 (-) True G445339
TU511219 lncRNA upstream 38617 66475 ~ 76605 (-) True G445341
TU511209 lncRNA upstream 60403 88261 ~ 118718 (-) True G445338
TU511562 lncRNA upstream 239339 267197 ~ 267516 (-) True G445658
TU511567 lncRNA upstream 240602 268460 ~ 281164 (-) True G445662
CI01000314_00314539_00325075.mRNA mRNA upstream 286370 314228 ~ 325950 (-) True CI01000314_00314539_00325075
CI01000314_00328906_00331255.mRNA mRNA upstream 300741 328599 ~ 331817 (-) True CI01000314_00328906_00331255
CI01000314_00345636_00351713.mRNA mRNA upstream 317351 345209 ~ 353842 (-) True CI01000314_00345636_00351713
CI01000314_00357634_00433275.mRNA mRNA upstream 328199 356057 ~ 433359 (-) True CI01000314_00357634_00433275
CI01000314_00660252_00661614.mRNA mRNA upstream 631980 659838 ~ 662300 (-) True CI01000314_00660252_00661614
TU512069 other upstream 888272 929273 ~ 929583 (-) True G446094
TU512388 other upstream 1588932 1616790 ~ 1618284 (-) True CI01000314_01617434_01617974

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023284 False 6807 mRNA 0.41 24 NC_007128.7 50074372 ~ 50114272 (+)
bowfin (Amia calva) AMCG00000053 True 7162 mRNA 0.43 25 CM030141.1 991040 ~ 1042603 (+)