G445339


Basic Information

Item Value
gene id G445339
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 61377 ~ 63251 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU511217
AAACACACAGACTGTCAGTACAGTGGAACGTTTTATTACATAATGATTGCGCTTTATAGTGCAATCAATAAATATTAATCCAATGTATTCAAAATAAATGACAAGGCTTATAATTCTGAGGATTAATAATCTTTACAACTCCGACACATGAATAGAGAGGCATGTTCAATCCTTCTTCTTGGGCAGTGCTGCGCTGACCAGTGCATACACCACATAACCGCACCCAAAGACAGTGAGGGCCATTGTCGCCCTATACAAGAGAGCATCTTTAACGCCTCCCTTCAAATGAACCGGCATGCCATTGTCTTCCTGAAAGAAGCAGAAATGGCATATTAGCATTTGACACTTCAACACTTACTTTTAGGGAGGCCACAAGTGTCAAGCATAAAAACAGTTTAAAGAAGAAAAGCCAAATTCTACATTTGCACTACAGGAATTAAGAACAATGCTACAGATCTCCTTTAATACAAGTATTATCAAGGTCAATTTTACTTCTGTAGGCGAGACCACCAACACAAACTGAACAAGATCGATCTCAGATAGCAACAATTTAAAGAAAAGATTTTTATTCTTAAGAATTATAAAACAACAGCATAATGTAACAACAGCCACCCTCAATTTAGCGCCAGACTGCCATAAGCAGAATGTGCCAGCATCAAAGCCAGTGAAATCGCAGTTATAGAATAAGTGAAGCTTTACACTACTTGTTTAATTTGACACTTCATACTATTTCAGTATTATGATACATGCAATGATTAGTAATACAGCCTACTATACAAGTGAACCCTACTAGCGAATCATTTCGTACTTATCTGTTCATCCACAATATCAGTCCAGAACCTGGGAACAAATTACAGTCTTAACTTGTACATTACCATTAGCGAGTGCCAATGACGAATAAATAGACGTAATAACTAAACCTGTGAAATCTTAGGATTTGACTAAATGTCTAGTTGGATTAGATCAAAACTAACCTGAAACAACTTCTGCTTGCCCGGGACTTTATTCTCCAGCTGTCTGGGTGCGCTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU511217 True 1029 lncRNA 0.38 2 61377 63251

Neighbor

gene id symbol gene type direction distance location
CI01000314_00003811_00027858 VPS39 coding downstream 33519 3783 ~ 27858 (-)
CI01000314_00314539_00325075 NA coding upstream 250977 314228 ~ 325950 (-)
CI01000314_00328906_00331255 NA coding upstream 265348 328599 ~ 331817 (-)
CI01000314_00345636_00351713 NA coding upstream 281958 345209 ~ 353842 (-)
CI01000314_00357634_00433275 RALGAPA2 coding upstream 292806 356057 ~ 433359 (-)
CI01000314_00660252_00661614 NKX2.1A, NKX2.4A, NKX2-4 coding upstream 596587 659838 ~ 662300 (-)
G445341 NA non-coding upstream 3224 66475 ~ 76605 (-)
G445338 NA non-coding upstream 25010 88261 ~ 118718 (-)
G445658 NA non-coding upstream 203946 267197 ~ 267516 (-)
G445662 NA non-coding upstream 205209 268460 ~ 281164 (-)
G445634 NA non-coding upstream 241810 305061 ~ 307922 (-)
CI01000314_00916594_00919809 NA other upstream 852879 916039 ~ 920514 (-)
CI01000314_01617434_01617974 CGA other upstream 1553539 1616790 ~ 1618284 (-)

Expression


Co-expression Network