RNA id: CI01000314_00328906_00331255.mRNA


Basic Information

Item Value
RNA id CI01000314_00328906_00331255.mRNA
length 1247
RNA type mRNA
GC content 0.40
exon number 3
gene id CI01000314_00328906_00331255
representative True

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 328599 ~ 331817 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGCTCTTTGAAAATAGCTATTTAAAAAAAAACACACACACACACACATTAAAAACATACGTTAAAAAAAAGTGACTCTGAATCCAATCATTGTTACGGAAATAACATGAACGCTTATTACGATTATTACCATCATACAATCAGAAAATATTTGAGAACTTTTTCAAGAATTGCACCAAGGAACATTCGTACAAATTTCTTAGAATTTACAAACATCTTTCTTAAGAAGATTTTTGTGAATCCGCCCTCTGATATCCGCAACTTTCACGGTCTTGTTTTCATTCACGTCACACTACATATGCTGTCTACTTTGACTAAGGTCCATTAACAGAACCATTTTCTTATATTTCATGATGTAACCTTAACCATGGCTGTCCTTTCCTGTTCCCCTGCATCATTTGCTACTTCCTTATCTCCACGAACATGTTAATGATGGATTTATGCGCATTGTCAAACTGGCATTGTGACCCTGAGTCAGCAGTGTTGTATCCAGGCTGAGGTGTCCTGCGGGGTGAGATCTTTTGTTGTGAGTGTGGACCGAGGGGAGGGGTTTCAGGGTGGGATGGGTTCAGAAGGCGGTCCCTGGGGTCTGGGCCCTGAGCTGACTGCTAATGAGAAGCCATCTGAGGCCCTAGTGTTCTGGTTGAAGACCCAGTTGAATAGATTGTTTTGGACTGTTCCTGAATACTCAATGAGTCTGTGCGGTCCCCTGGGATTCTGCTCTCGACAGCCTTTAATGCCTCGCCTTTGTCACCTGATCTCCCTGCTTCCGACAGAGACAAGCGCTTGGACGGCGTGCGAAGCCTGCGTCACTGTTCTCTGCTTTATTGAATTAGTCCACGCCACCATCATTCGGCCCTCAGGAACCCACCTCATGCATTCAAAGGAACAACCTGTGCCACAACAATTAGAGAAACCCGAGACAGAGATGAGATGTTGAGCAGTGATGGCAGATAAATCAGAAATTAAGTCTGCCAGTAAAAGCAGCTTGATGGTTTTGACTACTGCAATGTCAAAATGATTATAAGTGAAAGATTTATTGGAGTACGTTTTACAAGAAAATACTATTTCAAAATTTCAGGTTTAATTCAATGTGTAACTAGCCTTTTCTTTGTAATTATTTGTGAAATTTACTAGCAATATCTGAATTAAAATGATTTCTACACCAGTTTTTTTTTTTTCATTGTAAAGACTTTTTTGTACACCATTTTTATACTATAATATCAAGTATACAAAGGAACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU511535 lncRNA downstream 14961 311391 ~ 313638 (-) False G445633
TU511536 lncRNA downstream 15343 311391 ~ 313256 (-) False G445633
TU511534 lncRNA downstream 15343 311545 ~ 313256 (-) True G445633
TU511538 lncRNA downstream 20677 305061 ~ 307922 (-) True G445634
TU511567 lncRNA downstream 47435 268460 ~ 281164 (-) True G445662
TU511598 lncRNA upstream 172623 504440 ~ 505143 (-) True G445692
TU511625 lncRNA upstream 200322 532139 ~ 532441 (-) True G445719
TU511636 lncRNA upstream 213008 544825 ~ 545024 (-) True G445730
TU511637 lncRNA upstream 214343 546160 ~ 546489 (-) True G445731
TU511641 lncRNA upstream 217689 549506 ~ 549842 (-) True G445735
CI01000314_00314539_00325075.mRNA mRNA downstream 2649 314228 ~ 325950 (-) True CI01000314_00314539_00325075
CI01000314_00003811_00027858.mRNA mRNA downstream 300741 3783 ~ 27858 (-) True CI01000314_00003811_00027858
CI01000314_00345636_00351713.mRNA mRNA upstream 13392 345209 ~ 353842 (-) True CI01000314_00345636_00351713
CI01000314_00357634_00433275.mRNA mRNA upstream 24240 356057 ~ 433359 (-) True CI01000314_00357634_00433275
CI01000314_00660252_00661614.mRNA mRNA upstream 328021 659838 ~ 662300 (-) True CI01000314_00660252_00661614
CI01000314_00705124_00706620.mRNA mRNA upstream 372951 704768 ~ 706651 (-) True CI01000314_00705124_00706620
CI01000314_00916594_00919809.mRNA mRNA upstream 584337 916154 ~ 920514 (-) False CI01000314_00916594_00919809
TU512069 other upstream 584313 929273 ~ 929583 (-) True G446094
TU512388 other upstream 1284973 1616790 ~ 1618284 (-) True CI01000314_01617434_01617974

Expression Profile