RNA id: TU512142


Basic Information

Item Value
RNA id TU512142
length 258
lncRNA type intronic
GC content 0.33
exon number 1
gene id G446157
representative True

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 1141415 ~ 1141672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGAACTTTTGCAACAGTCTGAACGTGTGTTATGTGTAGTCTCTGCCACTACTGATTGTAATATTCATGAATGAACCAAAACATCTGCATAAAAAAAAAGTTAAAATGATAAATAAAGCCCTTAAATTGTTTCAGACCTATCATGAAACAAACAAATCAACAAAAAAATCAACATATTCCCACTATATGTAACAACCAAAAACACACAGCAAATATGCCAGAACACAAACTCTGAAGCTTAATCATCACTCCTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512141 lncRNA downstream 144 1141055 ~ 1141271 (-) True G446156
TU512137 lncRNA downstream 2488 1138570 ~ 1138927 (-) True G446152
TU512135 lncRNA downstream 4691 1136470 ~ 1136724 (-) True G446150
TU512134 lncRNA downstream 5855 1135249 ~ 1135560 (-) True G446149
TU512133 lncRNA downstream 7227 1133893 ~ 1134188 (-) True G446148
TU512127 lncRNA upstream 48013 1189685 ~ 1190045 (-) True CI01000314_01185737_01190407
TU512310 lncRNA upstream 122306 1263978 ~ 1264429 (-) True G446282
TU512313 lncRNA upstream 130131 1271803 ~ 1272390 (-) False G446284
TU512312 lncRNA upstream 130163 1271835 ~ 1272390 (-) True G446284
TU512331 lncRNA upstream 176283 1317955 ~ 1319175 (-) True G446302
CI01000314_01034963_01048224.mRNA mRNA downstream 93191 1034963 ~ 1048224 (-) True CI01000314_01034963_01048224
CI01000314_00961406_01033528.mRNA mRNA downstream 107887 961118 ~ 1033528 (-) True CI01000314_00961406_01033528
CI01000314_00931320_00933166.mRNA mRNA downstream 207094 930773 ~ 934321 (-) True CI01000314_00931320_00933166
CI01000314_00916594_00919809.mRNA mRNA downstream 220901 916154 ~ 920514 (-) False CI01000314_00916594_00919809
CI01000314_00705124_00706620.mRNA mRNA downstream 434764 704768 ~ 706651 (-) True CI01000314_00705124_00706620
CI01000314_01160251_01175969.mRNA mRNA upstream 16732 1158404 ~ 1175969 (-) True CI01000314_01160251_01175969
CI01000314_01185737_01190407.mRNA mRNA upstream 43307 1184979 ~ 1190467 (-) False CI01000314_01185737_01190407
CI01000314_01234726_01235795.mRNA mRNA upstream 92492 1234164 ~ 1237004 (-) True CI01000314_01234726_01235795
CI01000314_01477362_01488717.mRNA mRNA upstream 335544 1477216 ~ 1488720 (-) True CI01000314_01477362_01488717
CI01000314_01501812_01512880.mRNA mRNA upstream 359806 1501478 ~ 1514489 (-) True CI01000314_01501812_01512880
TU512069 other downstream 211832 929273 ~ 929583 (-) True G446094
TU512388 other upstream 475118 1616790 ~ 1618284 (-) True CI01000314_01617434_01617974

Expression Profile