RNA id: TU512127



Basic Information


Item Value
RNA id TU512127
length 263
lncRNA type sense_over
GC content 0.46
exon number 2
gene id CI01000314_01185737_01190407
representative True

Chromosome Information


Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 1184979 ~ 1190467 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAGAACTGCACCGTCAGACTGAGTCATGTGACAGTGATGGATTCACGCATGTACTATTTCAGATTCATCACTGATAAACCTGATGGTAAATGGATTGGTGATCCAGGAGTGACTCTTGCTGTCACAGATCTTCAGGTGGAGTCTCCTGAGAGAGTGACAGAGGGAGATTCAGTCCGTCTGACATGTAAAAGCAGCTGCACTCTGACTGACAGAGCAACATTCATCTGGTACAGAGACTCACAGCCATTAACTGAGAGAAGAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU512142 lncRNA downstream 48013 1141415 ~ 1141672 (-) True G446157
TU512141 lncRNA downstream 48414 1141055 ~ 1141271 (-) True G446156
TU512137 lncRNA downstream 50758 1138570 ~ 1138927 (-) True G446152
TU512135 lncRNA downstream 52961 1136470 ~ 1136724 (-) True G446150
TU512134 lncRNA downstream 54125 1135249 ~ 1135560 (-) True G446149
TU512310 lncRNA upstream 73933 1263978 ~ 1264429 (-) True G446282
TU512313 lncRNA upstream 81758 1271803 ~ 1272390 (-) False G446284
TU512312 lncRNA upstream 81790 1271835 ~ 1272390 (-) True G446284
TU512331 lncRNA upstream 127910 1317955 ~ 1319175 (-) True G446302
TU512307 lncRNA upstream 150416 1340461 ~ 1342582 (-) True G446279
CI01000314_01160251_01175969.mRNA mRNA downstream 13716 1158404 ~ 1175969 (-) True CI01000314_01160251_01175969
CI01000314_01034963_01048224.mRNA mRNA downstream 141461 1034963 ~ 1048224 (-) True CI01000314_01034963_01048224
CI01000314_00961406_01033528.mRNA mRNA downstream 156157 961118 ~ 1033528 (-) True CI01000314_00961406_01033528
CI01000314_00931320_00933166.mRNA mRNA downstream 255364 930773 ~ 934321 (-) True CI01000314_00931320_00933166
CI01000314_00916594_00919809.mRNA mRNA downstream 269171 916154 ~ 920514 (-) False CI01000314_00916594_00919809
CI01000314_01234726_01235795.mRNA mRNA upstream 44119 1234164 ~ 1237004 (-) True CI01000314_01234726_01235795
CI01000314_01477362_01488717.mRNA mRNA upstream 287171 1477216 ~ 1488720 (-) True CI01000314_01477362_01488717
CI01000314_01501812_01512880.mRNA mRNA upstream 311433 1501478 ~ 1514489 (-) True CI01000314_01501812_01512880
CI01000314_01516556_01536550.mRNA mRNA upstream 326085 1516130 ~ 1536861 (-) True CI01000314_01516556_01536550
CI01000314_01540030_01540389.mRNA mRNA upstream 349750 1539795 ~ 1540389 (-) True CI01000314_01540030_01540389
TU512069 other downstream 260102 929273 ~ 929583 (-) True G446094
TU512388 other upstream 426745 1616790 ~ 1618284 (-) True CI01000314_01617434_01617974

Expression Profile