RNA id: TU527165


Basic Information

Item Value
RNA id TU527165
length 526
RNA type TUCP
GC content 0.43
exon number 2
gene id CI01000321_04515562_04517953
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4515534 ~ 4518187 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAAATTGACGGTAACACGCAGGAAATATGGCGAACCACCTTCGATTCATCGCTCGGACTGTCATGGTCCAGAACGGCAATGTTGATGCGGCATATGGCGCTCTGAGCAGAGTGCTGTCCTCGGACGGAATAATTGAATCTGTGAGACGCAGGAGATACTATGAGAAACCCTGTCGTATGCGACAGAGAAAGAGCTACGACAACTGTAAGAGAATCTACAACACTGAGATGGCCCGAAAGATATCTTTCGTAGCAAGGACACAAAGACAAGATCCATGGCTTGGATGTTAAGATGACATAAACAGACTGTTCACGTTGACCAACAGATGAGTCATGCACTGTGATCTGCCTCAGAAGCACCTTTGGTGTTTTGCAAAGATCCATGGGAACATTTTAACACTTAGATCATCAAAAGGTCATTGCAGGACTGTGTTCTGTCATCACCCTATTTCCATTTTGGATGTTGTGATATTGTAGGCTATAAAGCATTGTATGTTGTTGTTAATAATAAAAAATTGTTAAATC

Function

GO: NA

KEGG:

id description
K02970 RP-S21, MRPS21, rpsU; small subunit ribosomal protein S21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527169 lncRNA upstream 17422 4495458 ~ 4498112 (+) True G459225
TU527183 lncRNA upstream 54852 4451626 ~ 4460682 (+) True G459239
TU527253 lncRNA upstream 74081 4441177 ~ 4441453 (+) True G459292
TU527245 lncRNA upstream 85317 4428730 ~ 4430217 (+) True G459284
TU527177 lncRNA upstream 102194 4411006 ~ 4413340 (+) True G459233
TU527164 lncRNA downstream 116655 4634842 ~ 4634887 (+) True G459220
TU527289 lncRNA downstream 175427 4693614 ~ 4767280 (+) False G459323
TU527184 lncRNA downstream 178484 4696671 ~ 4700949 (+) True G459240
TU527175 lncRNA downstream 192245 4710432 ~ 4711448 (+) True G459231
TU527287 lncRNA downstream 247154 4765341 ~ 4767280 (+) True G459323
CI01000321_04299710_04300495.mRNA mRNA upstream 215013 4298858 ~ 4300521 (+) True CI01000321_04299710_04300495
CI01000321_04274723_04276159.mRNA mRNA upstream 239317 4273845 ~ 4276217 (+) False CI01000321_04274723_04276159
CI01000321_04223582_04224440.mRNA mRNA upstream 290023 4223582 ~ 4225511 (+) True CI01000321_04223582_04224440
CI01000321_04204706_04214819.mRNA mRNA upstream 300673 4204076 ~ 4214861 (+) True CI01000321_04204706_04214819
CI01000321_04188431_04194328.mRNA mRNA upstream 321149 4188431 ~ 4194385 (+) True CI01000321_04188431_04194328
CI01000321_04524751_04530395.mRNA mRNA downstream 6564 4524751 ~ 4531478 (+) True CI01000321_04524751_04530395
CI01000321_04532761_04559105.mRNA mRNA downstream 14574 4532761 ~ 4559105 (+) True CI01000321_04532761_04559105
CI01000321_04567844_04592431.mRNA mRNA downstream 49657 4567844 ~ 4592571 (+) True CI01000321_04567844_04592431
CI01000321_04605557_04620142.mRNA mRNA downstream 86778 4604965 ~ 4620398 (+) True CI01000321_04605557_04620142
CI01000321_04635524_04639904.mRNA mRNA downstream 117337 4635524 ~ 4640095 (+) False CI01000321_04635524_04639904
TU527265 other upstream 26982 4485397 ~ 4488552 (+) True G459303
TU527032 other upstream 501868 4006626 ~ 4009532 (+) False G459103
TU527033 other upstream 501868 4006663 ~ 4009532 (+) True G459103
TU525588 other upstream 712652 3789318 ~ 3789972 (+) True G457857
TU524456 other upstream 3692687 818464 ~ 822847 (+) True G456881
TU527167 other downstream 229225 4747412 ~ 4747464 (+) True G459223

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU198031 False 472 TUCP 0.43 2 NC_056717.1 17797125 ~ 17798816 (+)