G459323


Basic Information

Item Value
gene id G459323
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4693614 ~ 4767280 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU527289
ATATATACATATATATATATATATATATATATATATATATATATATATATATATATATAATATGCGCATATATATGCAGTTTAATGATTTTGAATGTCTTCTATCATTAATATTTGTGTTATCTGTGTTATATTACACATGGGTAACCCTGCTTTTTTGATATCAGTACCAGAATAAATTAATTACATTTTTTGGCCACTAATCTTTTGCCATATTTAGTCCAATTACTAATCCAAATCAGTTGACATATTTTCTTGTATTTCCTTTTTCTTTCTGCCCAATGAACAGCTTCGATGAATCAAAACTTCTGATCTTACTTATAAAGTTGGTTTCCAGGTGTACATTAGTGATTTGTTAGTGATTGTGTGAGAGTGTGCTTCTCATTGATTGTGCTTGGCAGTTTAAATGCTGAGGGTGCTGATCTGACCCACCGTTGCAGGACATACCATCACAGATCCTCTACACACACACGCCTGGGAGGAAGTGTGTGTATTTGGCCACTAACATCATTTCATTTTTTGCCACCTTTTCATCTACACATCAACACATTAATCCAACAAGTCTCTGCTCTCTCACGTCTCTTTTCCTCTCTCTCCATCACACAGTAAACATCTTTGCTCATTATATACAGTAATTTGTTCTGCAGCAAAACTAATAACTTACTAACTCTTAAAACAATGAATGTACAAAAACAACACAGCATTTCTGAATGGAAGTGTGTCAGTGGGTTTGGTAAACAGTATCGGATGCCTCCGTTTTCCGCCGTCAGGGTGCCGGTGCCCAATCTGGAACCACTCTGTTCGTGTCCCATCACAGGCACCAGCACCAATTCGGTGGAAAAGTGGTACATGTGTGTTCCGTGCTGCATTTCCAGGTTTAAATCCAGGTACAGCACACAGTCTTGTAAAATCATGAGACAGTGAGAATAAAACCCACTGAGCGGATGCTACATAAATTAATACGAAACTCAATTATTTCTCTGGATCTACAAAACATGAGAAAACAATGAACGGTTTGATCGCTTTACTCCTCCGCGAGAAGCTCTGTGGTCTTTGGCTCATTCTTGGCTTGCGTCCCCTCATTATGACACTCAAATAAAGAGGTTGTCCATATTCCAAGTACATGCTAATTCCAATTCTGCATTACTGTTTCAGTTTGTTCTTATCCAGGTTTTGAGTGGTCAGACGTTTATATGAAGAAAAAAAAAAAAAGGAAAGGGGAAAAACATCTCCCTTTGCGTGAACAGTATTTCCAGAAAAATACTGACGTCTCGTTTTTTTGTTTCTTTAGAAGTGTCCGAAAGTTCAAAGCCCTCTTCATTCCAGTTATGCTTCTTCACCGCCACCAGCAGTGTGAAAGAGCTCCGCTTCCTGTACGATTCTCCCAATGGCCAGCACTGGGACGTAAAGAGCTACCTCTGTGTGCTTCCATCAACACAGGCCGCCGTCAATATAGTCTTTTGTAAGTGTAATTTAGTCCAGTGTCTATCTCACTGTAAGACCAACAATAATAAAAGTGGAAGTAAGGTTGTGAGAACAGTCCAGGATGCTCCTGAAATGGCGGAGTTTGTCTTTGTGCTTTTCTGTACTTCAG
>TU527287
CTGTTAATCGTATTCAGCTGCGTCAGTTGTACAAACTGTCCGGAATTGAGCTTAAACGGCTACATCATGTCAGAGTCAGTGTATGTGGTGTTTCGTTCATAGTGCTTTAGCTGATTAGTGTTATAAATGTTTCCCCACACTAAATGTTCCTGATAGTATATAGTATATGTAGATTTACAACAAAATAGCTAAGCTTATATTGTAGTGACAGACCAATATATCAGACAGGCCAGTTAATCAGTTGATATTTGGCCATTTTGGGATTCATCAGTCACTATTTTTTGGGGGGCTGGATTTTTATTAAATATTATGTAAAATAAATGTTCATTTAATCTCAAATATCTCAATTGCTACAATTAAACTGCATATATATATATATATATAATATGCGCATATATATGCAGTTTAATGATTTTGAATGTCTTCTATCATTAATATTTGTGTTATCTGTGTTATATTACACATGGGTAACCCTGCTTTTTTGATATCAGTACCAGAATAAATTAATTACATTTTTTGGCCACTAATCTTTTGCCATATTTAGTCCAATTACTAATCCAAATCAGTTGACATATTTTCTTGTATTTCCTTTTTCTTTCTGCCCAATGAACAGCTTCGATGAATCAAAACTTCTGATCTTACTTATAAAGTTGGTTTCCAGGTGTACATTAGTGATTTGTTAGTGATTGTGTGAGAGTGTGCTTCTCATTGATTGTGCTTGGCAGTTTAAATGCTGAGGGTGCTGATCTGACCCACCGTTGCAGGACATACCATCACAGATCCTCTACACACACACGCCTGGGAGGAAGTGTGTGTATTTGGCCACTAACATCATTTCATTTTTTGCCACCTTTTCATCTACACATCAACACATTAATCCAACAAGTCTCTGCTCTCTCACGTCTCTTTTCCTCTCTCTCCATCACACAGTAAACATCTTTGCTCATTATATACAGTAATTTGTTCTGCAGCAAAACTAATAACTTACTAACTCTTAAAACAATGAATGTACAAAAACAACACAGCATTTCTGAATGGAAGTGTGTCAGTGGGTTTGGTAAACAGTATCGGATGCCTCCGTTTTCCGCCGTCAGGGTGCCGGTGCCCAATCTGGAACCACTCTGTTCGTGTCCCATCACAGGCACCAGCACCAATTCGGTGGAAAAGTGGTACATGTGTGTTCCGTGCTGCATTTCCAGGTTTAAATCCAGGTACAGCACACAGTCTTGTAAAATCATGAGACAGTGAGAATAAAACCCACTGAGCGGATGCTACATAAATTAATACGAAACTCAATTATTTCTCTGGATCTACAAAACATGAGAAAACAATGAACGGTTTGATCGCTTTACTCCTCCGCGAGAAGCTCTGTGGTCTTTGGCTCATTCTTGGCTTGCGTCCCCTCATTATGACACTCAAATAAAGAGGTTGTCCATATTCCAAGTACATGCTAATTCCAATTCTGCATTACTGTTTCAGTTTGTTCTTATCCAGGTTTTGAGTGGTCAGACGTTTATATGAAGAAAAAAAAAAAAAGGAAAGGGGAAAAACATCTCCCTTTGCGTGAACAGTATTTCCAGAAAAATACTGACGTCTCGTTTTTTTGTTTCTTTAGAAGTGTCCGAAAGTTCAAAGCCCTCTTCATTCCAGTTATGCTTCTTCACCGCCACCAGCAGTGTGAAAGAGCTCCGCTTCCTGTACGATTCTCCCAATGGCCAGCACTGGGACGTAAAGAGCTACCTCTGTGTGCTTCCATCAACACAGGCCGCCGTCAATATAGTCTTTTGTAAGTGTAATTTAGTCCAGTGTCTATCTCACTGTAAGACCAACAATAATAAAAGTGGAAGTAAGGTTGTGAGAACAGTCCAGGATGCTCCTGAAATGGCGGAGTTTGTCTTTGTGCTTTTCTGTACTTCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU527289 False 1593 lncRNA 0.39 2 4693614 4767280
TU527287 True 1918 lncRNA 0.39 2 4765341 4767280

Neighbor

gene id symbol gene type direction distance location
CI01000321_04649973_04674616 CHRNA7 coding upstream 18683 4649973 ~ 4674931 (+)
CI01000321_04635524_04639904 RPS27.1, RPS27, RPS27.2, RPS27.L, RPS27L coding upstream 53519 4635524 ~ 4640144 (+)
CI01000321_04605557_04620142 NA coding upstream 73216 4604965 ~ 4620398 (+)
CI01000321_04567844_04592431 CELF3, CELF3A coding upstream 101043 4567844 ~ 4592571 (+)
CI01000321_04532761_04559105 NA coding upstream 134509 4532761 ~ 4559105 (+)
CI01000321_04774523_04814193 NA coding downstream 6559 4773839 ~ 4814239 (+)
CI01000321_04859626_04859952 NA coding downstream 91715 4858995 ~ 4860916 (+)
CI01000321_05000584_05005208 NA coding downstream 233304 5000584 ~ 5005379 (+)
CI01000321_05126875_05128453 NA coding downstream 359113 5126393 ~ 5129935 (+)
G459225 NA non-coding upstream 195502 4495458 ~ 4498112 (+)
G459239 NA non-coding upstream 232932 4451626 ~ 4460682 (+)
G459292 NA non-coding upstream 252161 4441177 ~ 4441453 (+)
G459284 NA non-coding upstream 263397 4428730 ~ 4430217 (+)
G459682 NA non-coding downstream 79076 4846356 ~ 4846583 (+)
G459683 NA non-coding downstream 80667 4847947 ~ 4848156 (+)
G459785 NA non-coding downstream 245392 5012672 ~ 5013312 (+)
G459792 NA non-coding downstream 251630 5018910 ~ 5025813 (+)
G459812 NA non-coding downstream 268067 5035347 ~ 5035939 (+)
CI01000321_04515562_04517953 MRPS21 other upstream 175427 4515534 ~ 4518187 (+)
G459303 NA other upstream 205062 4485397 ~ 4488552 (+)
CI01000321_04013470_04014515 CACNG8 other upstream 679948 4013468 ~ 4015412 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other upstream 890732 3792915 ~ 3805511 (+)
CI01000321_00815160_00819665 NA other upstream 3870767 815160 ~ 819749 (+)

Expression


Co-expression Network