CI01000321_04859626_04859952


Basic Information

Item Value
gene id CI01000321_04859626_04859952
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4858995 ~ 4860916 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_04859626_04859952.mRNA
GTATATAAAGGAATATACTCAAAGAGCAGTTAAATATGCATCATACGGTAAAAACTAAATCTGCATCGCAATTCTTCGATATAAAACAGCGAATTGCAGTTTACGACTCGACCGCTCTTACAAAAATGGCCACTATGCTAATCAGTGGCGCTGGCCAGTCCAGTACCTTTCCATGATGACACGTACATACTATAGGAAATAAAAGTTTATCTATCCATCTAGCATTAGTTTGATCCATCTCGATTCTCTTTCAATATGTGCGCTGCTATGATGACCAAACTTTTTCAGTCACACAATGTACAAAAGTGATGGTCTCTGACCGATAATGTGCCTCTAGTTTCCAAGTTCAGCAATGGAACTAGGAAACTAGATGGAAAGCGTTCCCATTACAGCTCACAGACGAGTCTCCAGCAACTAGCAGAAACAGGAGCCGTGCCTTTCTGTGATCGATTCATAAGCCTAACACCTGAACTTAGTGACTGGCAAATGAGTTTTATTGATCTCAGCAGCAGCACTATCAATGACTGACACATATTGCAGTCACACAGGTATGGGTTGTGACAGAATGTTAAGACGGGATCAAAGGTCTCCAGCACTCCTCGAGTCTCTCAGCTGAGATCCACTGACCACTATGATGCTTGTCATATCCATTCGAGTTCATGTCAATCTTAAAATGTCCATCTCAAGATTTGCCCCAGTCTGGATAGGTTCATTAGAGATGAGAACGGACGTAGCTAGAGGTAGAGAGACCTCACTGTCTAACCAGATTCATTTTCCTCCGCGAGTATGTTTGAGGAGAGTGGACGTTCCATCACAAAGGCAAATTCTGAAATTGATGCACAACATCCTTATTCCTAAGGTCCAAAATTGTGGAGACAAAGGCCACTATTTGGGTGCGGTAGATCTACAATTAGCTCCAGTGTTTAGGGCTCGACTATTGGTTAATCTGACTGGATAATCTCCCGCACAGGTTGAATGAAAGGCGATCTTTTTTTCGGAGCGCTCGGAACTGCTGGCTCAGAAATGTCAGGTTGCTAAGACACAAGGAGAGCAGCGAGGAGAAACGTTGCCACAGTGATTAACAGTCGGTCTCCAGACGGACTGCTCCCGCTGACGCTCTTCTCCAGTTTGGGGATCTCAGGGTTAAACTCATCTGAGAGGAAAGAAAGAAAGAAAGAAATAAAGAAAGAAAGGTTAGTGAGCATTTAAAGAGTTTTTATACTGATAAAAAGTCTACGCCGCCTCAGAGTATAGCATTTAAAAAAATATACATATAATTTTTCAGAAAGAAATTAACGCTTTTATTCAGCAAGAACACATTAAATTGATTAAAAGTAACAGTAGAGACATTAATAATGTTACAAAAGATTTCTATTTCAAATAAATGCTGTTCTTTTGAACTTTCAATTAAATCCAGAAAAAAGGCATCACGGTTTCCACAAAAATATTAAGCAGCACAACTGTTTTCAACTTTGATATTAATAAGAAATCAGTCAGCATATGGCTTGTAATGGCTATTATTTTATAATATTACTGTTTTTACTGTATTTTTGATATATTTGGTGAGCATAAGAGACTTACTAACCCTAAACTTTTGAACAGTAGAGTATATAATGAGATTTTATCGGTTATAATATGATTTTTTTATGTTTTACTCTGAGGTGGAAACCAATTCCAGATCTATTCTCCAGTTGAATTGTGAGTATTAGCAAAGCTGGATTACCAACATTCCATCCTGGGCAGCGTTTCCCAAAAGCATCGTAAGCCTAAGTTGATCGTATCTCAATTGGTGACAATGGAGCTACGATCAACTTAAGCTTACGATGCTTTTGGGAAACGCTACCCTGTTTGATAGTAAGGATGAAATACACATGTATATCATCACAAAATATCCAGTGTCCAATGATCATCAATCATTCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_04859626_04859952.mRNA True 1922 mRNA 0.39 1 4858995 4860916

Neighbor

gene id symbol gene type direction distance location
CI01000321_04774523_04814193 NA coding upstream 44756 4773839 ~ 4814239 (+)
CI01000321_04748037_04748315 DPM3 coding upstream 110677 4747650 ~ 4749579 (+)
CI01000321_04716387_04724423 TRIM46, TRIM46B coding upstream 134229 4716387 ~ 4724766 (+)
CI01000321_04649973_04674616 CHRNA7 coding upstream 184064 4649973 ~ 4674931 (+)
CI01000321_04635524_04639904 RPS27.1, RPS27, RPS27.2, RPS27.L, RPS27L coding upstream 218900 4635524 ~ 4640144 (+)
CI01000321_05000584_05005208 NA coding downstream 139668 5000584 ~ 5005379 (+)
CI01000321_05126875_05128453 NA coding downstream 265477 5126393 ~ 5129935 (+)
G459683 NA non-coding upstream 10839 4847947 ~ 4848156 (+)
G459682 NA non-coding upstream 12412 4846356 ~ 4846583 (+)
G459323 NA non-coding upstream 91715 4693614 ~ 4767280 (+)
G459231 NA non-coding upstream 147547 4710432 ~ 4711448 (+)
G459240 NA non-coding upstream 158046 4696671 ~ 4700949 (+)
G459785 NA non-coding downstream 151756 5012672 ~ 5013312 (+)
G459792 NA non-coding downstream 157994 5018910 ~ 5025813 (+)
G459812 NA non-coding downstream 174431 5035347 ~ 5035939 (+)
G459815 NA non-coding downstream 176097 5037013 ~ 5037467 (+)
G459818 NA non-coding downstream 180043 5040959 ~ 5041256 (+)
CI01000321_04515562_04517953 MRPS21 other upstream 340808 4515534 ~ 4518187 (+)
G459303 NA other upstream 370443 4485397 ~ 4488552 (+)
CI01000321_04013470_04014515 CACNG8 other upstream 845329 4013468 ~ 4015412 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other upstream 1056113 3792915 ~ 3805511 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013864 efna3a coding NC_007130.7 CM002903.2 8144556 ~ 8339860 (+)