Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU537803 |
| length | 5064 |
| lncRNA type | read_through |
| GC content | 0.42 |
| exon number | 7 |
| gene id | G468562 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000325 |
| NCBI id | null |
| chromosome length | 10587162 |
| location | 9386454 ~ 9395538 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU537792 | lncRNA | downstream | 11089 | 9375143 ~ 9375365 (-) | True | G468551 |
| TU537791 | lncRNA | downstream | 12105 | 9373991 ~ 9374349 (-) | True | G468550 |
| TU537695 | lncRNA | downstream | 53255 | 9331030 ~ 9333199 (-) | True | G468460 |
| TU537716 | lncRNA | downstream | 181607 | 9204570 ~ 9204847 (-) | True | G468481 |
| TU537702 | lncRNA | downstream | 208712 | 9177533 ~ 9177742 (-) | True | G468467 |
| TU537786 | lncRNA | upstream | 184452 | 9579990 ~ 9581436 (-) | True | G468545 |
| TU537774 | lncRNA | upstream | 277312 | 9672850 ~ 9674067 (-) | True | G468533 |
| TU537766 | lncRNA | upstream | 400873 | 9796411 ~ 9799055 (-) | True | G468526 |
| TU537885 | lncRNA | upstream | 437407 | 9832945 ~ 9833293 (-) | True | G468639 |
| TU537886 | lncRNA | upstream | 438226 | 9833764 ~ 9834139 (-) | True | G468640 |
| CI01000325_09334619_09368476.mRNA | mRNA | downstream | 17978 | 9334604 ~ 9368476 (-) | True | CI01000325_09334619_09368476 |
| CI01000325_09288339_09296072.mRNA | mRNA | downstream | 90328 | 9288032 ~ 9296126 (-) | True | CI01000325_09288339_09296072 |
| CI01000325_09286047_09286556.mRNA | mRNA | downstream | 99898 | 9285534 ~ 9286556 (-) | False | CI01000325_09286047_09286556 |
| CI01000325_09266964_09281814.mRNA | mRNA | downstream | 104392 | 9266624 ~ 9282062 (-) | True | CI01000325_09266964_09281814 |
| CI01000325_08919961_09083730.mRNA | mRNA | downstream | 302724 | 8919961 ~ 9083730 (-) | True | CI01000325_08919961_09083730 |
| CI01000325_09400787_09422170.mRNA | mRNA | upstream | 5249 | 9400787 ~ 9422170 (-) | True | CI01000325_09400787_09422170 |
| CI01000325_09434932_09471529.mRNA | mRNA | upstream | 39367 | 9434905 ~ 9471529 (-) | True | CI01000325_09434932_09471529 |
| CI01000325_09518831_09533382.mRNA | mRNA | upstream | 123225 | 9518763 ~ 9533787 (-) | True | CI01000325_09518831_09533382 |
| CI01000325_09537381_09540937.mRNA | mRNA | upstream | 141678 | 9537216 ~ 9541330 (-) | True | CI01000325_09537381_09540937 |
| CI01000325_09571021_09576839.mRNA | mRNA | upstream | 174948 | 9570486 ~ 9577181 (-) | True | CI01000325_09571021_09576839 |
| TU537690 | other | downstream | 99130 | 9287209 ~ 9287324 (-) | True | G468455 |
| TU536859 | other | downstream | 688871 | 8679172 ~ 8697583 (-) | True | G467741 |
| TU536851 | other | downstream | 814976 | 8564630 ~ 8568433 (-) | True | G467737 |
| TU536674 | other | downstream | 1431262 | 7946345 ~ 7955192 (-) | True | G467578 |
| TU536664 | other | downstream | 1769624 | 7615486 ~ 7616830 (-) | True | G467570 |
| TU537962 | other | upstream | 771561 | 10167099 ~ 10192342 (-) | True | G468702 |
| TU538097 | other | upstream | 920592 | 10316130 ~ 10316685 (-) | True | G468823 |
