RNA id: TCONS_00022034


Basic Information

Item Value
RNA id TCONS_00022034
length 3490
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id XLOC_010246
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46790677 ~ 46794172 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtaacattacagcgcctcttcCCCTTCACTGCACGGGGTTTATGCGCGTAACCAGAAGGGTTTATGATTTCACTAGGCCGAATGTCTTTTTTTGTGGTCCCCAAattttgttcgctgtaggcttagctaagctaactctgtagtACCCATTGTCTCCCTATGCAgggatgttgtttatgttcacacatttaCATTATCATCAAGTAAAGTTCAAAATATGATAtgatagtggaccacccctttaacaattAAACACTTCATTTGACGTTATTTTCAACTGTTCCATTTTGAGAAATATATTATCTCTTTATTCCAACCTCCACTTTAAAGGACATCTTACTATTAAAGAATAACAAATTTATAAATTTAGACTTCTTGACATGTTCGCTGGAAAATTAAAAACAGGTGGGagtgtattttttttcatattttcttaTCTTTTTATCTGTCTACCTGTCTCAAGATTCTTCAAATACTTTCACTTCTTTCGTTTTGCGTCATATTGCAGATATCATCATCTgaggtgtgtatatatatatacatatagctCTCTGTGGGGAGGAAACTCTAGTCAGCTCCCCTGTACAACTTTGAAGAAGAGCATTAGAAAAAGAAAAtggtaagaaaataataattcacatttataattaaacaccttATAAGTGTCATATGCTTtatgtttaaatagttttaaatcttctaatgatttttatttgatgggatcattaagacattaaaaatgctgggttgtttcaatCTAAattggtcaaatatggacaaacctggTCTCAATAACGGCACTATAAAAAAAAAccctgtaattttacggtttatttctgactgctggggtgccagaaaaaaataaatgttaaattaaagaaatttactgtaaaatataaatttaggtaaatttctgtattttaaaggccgttattttaagtttttgttttccggcaccccagctgtgCAACACTGTAATCTTCACAGGTTTCCTACTTCTAGATTTTCCAGATTTCTCTCGTAAGTTTAAAGTTATTATGGCACTTTTATTTCTGCTGTGTGGACTTTTAAAGTTGAAAATGAATCTTGGAAATTTAACTGgcagttatttatattttaatagtttaaatcagTACATTGTATAAGACATTGAGAGaattaagtttgtaaaataaaagaaaaaggagTGGACGTTTATTAACctgttttgtattgtaatttacaTTACTAAACCAGTCAAtaaatcacttcaaactatttcacttttcaaaacttttcaacatcaaaagtttgctgaaggaaagatcaagatcccataatggaattcaaaagcataaataaatgaaaatgcaaaaaaaaaaaaaaaaaaaaaaaaaatcacaaatttgaAAATCTAACAGATTGCTTTTAAttgtgaacccagcatttttagtgtaAGGCATCtaatttttgtattaataataataataataataataataataataataataataataataataataataataataacaataatatatttgggaAACTAAACCAGTGAAAAACgtgtaaaaatgctaaatgaaatACTAAACTTCTTGAAAATATCCGATAAAAGGCTAATAGATTTCTCATGTGATTTCTTCTTACCAACTATAGGCATCACAATGTGATCAATGCAACTTGATAAAAAACTACAATGGCTCATTACCGGATCAGTTGAGTAATGTATTTCAAATGTAGATTTTTACTGATGTAGATATTACTGATACGTCTAATATACTTCATAAATGTATCAATCCTTACATTGTATCATTTTCTTCTGAAGGTATAGATGTAAGTGTAACCAGGGGGCAAACTCAGCATTACTTGCTCTGGTAAGTGtgccaataataaaaaaaattaattattcctTCTTTACAATCTAACTTTAGTAACAAAGTCGAAACAATGGGAAAGTAAACTTGAGTTGGTTCTCTAAGAGGACATTTGGCAAGACATTATAAATAAGATTCACTCAATTTCAATTGGTTTGCGACATACaattattcagtttaaagtggtcCATCGCCTACACTAcactaaaggcttaactaggttaattaggttaactaggcaggttagggtaattaggcaagttattgtataatgatggtttgttctgtagactattgagaaaaaaatatagcttaaaggggctaataatattgtccttaaaatggtgtttaaaaattttaattgcttttattctagccaaaataaaacaaaaagactttctccagaagaagaaatattatcagtcatactgtgaaaatttctttgctctatgtaacatcatttgggaaatatatttaaaaaaaaaattcaaatgggggctaataattttgacttcaactgtatatcagggCATGATGTAAAACAGATTAAAGTGTGCATAATATATTGTATAGAAATGATGCGGTGCGGCGGGGGCTCTGTTGGAGCAAAGATAATTTGTctctgtttttcaaatatttaaaaaaaatttgtgttattgaccaaaatgttaataaaagatctgaacaacaacaaaaaaccttCTTTAGGATCAGTGAAGCGCAACTGAACTGAGAGGGAAGAGTTTTCTTGAGTTTCTAGAGCTGGTTACTAAACGCAGTAACAAAAGCCAATCAACATGAGCACGAGCATATAACCGAATCTTGCTTATCCTCTTATTCCCCATATTTTCTCAGGTTGCATCGTACATAAACAACAGCCGTGCTCTGATGACGGAATCAAGAGATGGGACATACACTCGACATTACCAAAACATCGAGCAAGGCATTCGCTCACATCAGCGTGTAGTCAGAAGGAACAATCAAGTTGTAGAAGCTGAATATGTGATTTATGAAAGTAATTAAAAGCTCCCTAATGAGGTTTTGGTCACACTTAACAATAATGTTCCACTGATTAATGTTGatgtatttaataatatgaacaaacaatgaataatacatttattacaggaTTTTGTCCAAGATTTGATaagattatttaattaaaataaagtcatttattgTTAGTTCTTCCTATCTcaaagtgcattaactaatgttaaaaggCCTAAATTTAGTTGGAATGAAATACTgagatttgcattattattaatagattttatacaaatataattCATTCTTAATTCATGTAGTAGGTAAAAACATTAACAATCATTAACCTAATGGAACATCATTGTAAAGGCTCATTTACTCACGACTTGTGAGTCAGTTTAAAGTTTCTGTGTCTGTGCGTTCTGTTGAgcataaaatatcttctttcatgaagccaaaggttacaggtttccaacattctgcaaaacatcttcttttgtgttaaatgtTAGCGAGGATCATTCATGTCACTTCGTGGTCAAGTCAGGCAGGTTTTTGACTAGCAAATGTGTGCAATTGTGGGTCTATCATAATAATTGTGCCAACGTAGCATAATACATGCCATGGCTGTATG

Function

GO:

id name namespace
GO:0042738 exogenous drug catabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0046906 tetrapyrrole binding molecular_function
GO:0048037 obsolete cofactor binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022033 lncRNA upstream 221193 46556343 ~ 46569484 (+) True XLOC_010241
TCONS_00022032 lncRNA upstream 221525 46555394 ~ 46569152 (+) True XLOC_010240
TCONS_00021750 lncRNA upstream 508521 46276944 ~ 46282156 (+) True XLOC_010233
TCONS_00022031 lncRNA upstream 519789 46269724 ~ 46270888 (+) True XLOC_010232
TCONS_00022030 lncRNA upstream 686667 46085390 ~ 46104010 (+) True XLOC_010229
TCONS_00022035 lncRNA downstream 2260 46796426 ~ 46797326 (+) True XLOC_010247
TCONS_00022036 lncRNA downstream 32422 46826588 ~ 46830237 (+) True XLOC_010249
TCONS_00021753 lncRNA downstream 589629 47383795 ~ 47389378 (+) False XLOC_010255
TCONS_00021752 lncRNA downstream 589629 47383795 ~ 47389378 (+) True XLOC_010255
TCONS_00020271 lncRNA downstream 634623 47428789 ~ 47430917 (+) True XLOC_010256
TCONS_00020260 mRNA upstream 48898 46725087 ~ 46741779 (+) True XLOC_010245
TCONS_00020259 mRNA upstream 76625 46695777 ~ 46714052 (+) True XLOC_010244
TCONS_00020258 mRNA upstream 99471 46684855 ~ 46691206 (+) True XLOC_010243
TCONS_00020256 mRNA upstream 109507 46666074 ~ 46681170 (+) False XLOC_010242
TCONS_00020257 mRNA upstream 110043 46666165 ~ 46680634 (+) True XLOC_010242
TCONS_00020261 mRNA downstream 13048 46807214 ~ 46808014 (+) True XLOC_010248
TCONS_00020262 mRNA downstream 74844 46869010 ~ 47064933 (+) False XLOC_010250
TCONS_00020263 mRNA downstream 201232 46995398 ~ 47178134 (+) False XLOC_010250
TCONS_00020264 mRNA downstream 202272 46996438 ~ 47178134 (+) True XLOC_010250
TCONS_00020266 mRNA downstream 409256 47203422 ~ 47204301 (+) True XLOC_010252
TCONS_00020229 other upstream 1123825 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020228 other upstream 1202347 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020217 other upstream 2085523 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020216 other upstream 2102742 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020214 other upstream 2185237 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020265 other downstream 218175 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020272 other downstream 1229127 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020273 other downstream 1364143 48158309 ~ 48158423 (+) True XLOC_010260
TCONS_00020274 other downstream 1462847 48257013 ~ 48257130 (+) True XLOC_010261
TCONS_00020297 other downstream 2753605 49547771 ~ 49547886 (+) True XLOC_010272

Expression Profile

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