RNA id: TCONS_00022038


Basic Information

Item Value
RNA id TCONS_00022038
length 2221
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_010270
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 49161419 ~ 49164092 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caaaattattagcccctttaacagTGTTGATGCTGAAGCTGTTGATGCTGAAAAATGCTAAAGGCAGCTTCCCACCCAATTGGGctgttttgaatttacatttGTGGGTAAAAAATGACATAGGCGGGTAGTGAAAATTTGAGCGGTTTTGCAACAGCGTGCCCATCAGCCCCGGTCTTCACTTATAAACCTGTTATGATCTCCCAAAGAAATGCCATAGCCCCCGTTCTTCATATACACATGCTTACAACAGTCCCAACGAGCCCCACCCACCCTTATAATTCTTTTCGATCTTTTTGAAGTTTATCTTTTACAATTAGGGAAAAATTGTTTAAGTTTTATTAATTCAATCGCTAACATATTTTgtgaaattttgaaaaaaaaaaagtctgcaaaaGTCATCAAACAATCTGCAAGCATTTATCGATACAATATGCAAACATTTAAAGATGCTGTGTGTGAGTTTTTGACTAAGCATAAAAAGAGCAtaatatgtgtgcagatattACAGACACATGCTAAGTGAGCAttcctgtttatatgaaaaacaatgctgaagtcagatattctgctttgaaaatgtgttttccgtgccAAAACGATCTttattttggttcttttaacccactcaatgccagtttagccaattatagttcagcactccgggttgccttgatggaaaacagtgtatttcattcattcagccaGAAACACTCTCCAAGCATGCGTCTGTCTTCGAAATGCGATCTCCAGTGAACAGTAGCTtcagaaatgagacgcagattcagagttccacatgagGTgattattgtcagttttctgttgttcagctgcaagaattTGAAGCCATTACTAATATCTCAATTCAagatgttggttagaacaaaaactaatTTGAACATGGAAAATATTCCCTTTATCGCGTGTCATTGCTTTAATTTAGAACAGGACTTAAGGCAGACTcactcctcaatctggcaacctgcgcttgagtttgttttgatccaggaatgtaatacctagttcaaccactgggtgtcaaactcacatactgcacctttaataatctttttattatttgaattattattgtttGAGTAGGGATACAcattattagaaatattttactaataaaacattGTCTTATcatgcatacaaaaaaaaatagtatataaattaaaagaaagtcCTAAATATTTCAAGATTTGATAAAGTTTCAGACCAGCTATTAAATTTGTAAGATAATAATCTTGAGGCCCCATAGGAACTTGACCTTAGCTAttttttaaagaacaaagttGCACTTGCCCtttgtaaaacactgtaaaaaaaataaataagtattttcttaaggtgtaaataaaacaaatatcggagtgtgtttttaaaaatacaaatgtcagTCTCTGCTGTAAAACAGTACGTTCGGTTTGTTACTTGGCATTTCCCAGTAATCATTTTTAACAGCTTTCTAGCAACTTGTGTGAAATTCTTTTGTTGAATTTCACATCAGATGTTTTCTTTGagtgatgtgtgtatgtgtgtgcattctCCTGCAGTGTGTATGTGGCCTCTGAGAGTGTATTGAATACTGAAATTAAAGCTTCTGGAGCATTCCTGGAAATGAAtcagcctgtgtgtgtgcgtgttttggaGACTGTTCAGATTTGATTCTGCCTTGTACTGAAGTTCTGTCTTACATTGCCTTTTGAACCCttggcttttgtgtgtgtgtgtgtgtgtgtgtttttttttttgtttgtttgtttccggCTCATTCCATTGTGCCAATCTACTGTCGGACCTTGTGAAGCACTTCCATTGGATTTCACTCCTTGTGGCCAGAGATTCAACTGGACACGATAAAGAAAGATTTGTTTATACATTTCAGTGCTGTTATTGTGTATTTATAATTATAGTTCTCCATTTATACCAGTTAAGAGTTGCTGATAGTTTCCAAGAAGATATCAGTTTTGTTTAACTCTGTTAAGACCCAGTGCTCTGAAATAAACCATGTTAATTACATACATCTTCCGCTGTTTCAAGTTTCTCATGCATATTCAGGAATTCATTCACAAAAATGTCATGAGGTTTTCCTAAAACTGTTGACCTACGGCATTTCTTGTGgcagtatatacagttgacgaCAAAGTTAATCTCCCTCCTGTGCAATTTCTATACCTTTACAAGCAGATTAAGGgtttttttcatagtatttcgt

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0023061 signal release biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0048666 neuron development biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0004857 enzyme inhibitor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021756 lncRNA upstream 484385 48668314 ~ 48677034 (+) False XLOC_010264
TCONS_00020281 lncRNA upstream 484385 48671344 ~ 48677034 (+) False XLOC_010264
TCONS_00020283 lncRNA upstream 484385 48671357 ~ 48677034 (+) False XLOC_010264
TCONS_00022037 lncRNA upstream 484385 48671360 ~ 48677034 (+) False XLOC_010264
TCONS_00020280 lncRNA upstream 484385 48671460 ~ 48677034 (+) False XLOC_010264
TCONS_00022039 lncRNA downstream 437517 49601609 ~ 49618621 (+) False XLOC_010273
TCONS_00020305 lncRNA downstream 936328 50100420 ~ 50101911 (+) False XLOC_010276
TCONS_00021757 lncRNA downstream 1071288 50235380 ~ 50260317 (+) False XLOC_010278
TCONS_00022040 lncRNA downstream 1076228 50240320 ~ 50260134 (+) False XLOC_010278
TCONS_00021758 lncRNA downstream 1076228 50240320 ~ 50260134 (+) False XLOC_010278
TCONS_00020291 mRNA upstream 1238 49088698 ~ 49160181 (+) False XLOC_010269
TCONS_00020292 mRNA upstream 1238 49089123 ~ 49160181 (+) False XLOC_010269
TCONS_00020294 mRNA upstream 1238 49090644 ~ 49160181 (+) False XLOC_010269
TCONS_00020295 mRNA upstream 1238 49091322 ~ 49160181 (+) True XLOC_010269
TCONS_00020293 mRNA upstream 56856 49090613 ~ 49104563 (+) False XLOC_010269
TCONS_00020296 mRNA downstream 85577 49249669 ~ 49253574 (+) True XLOC_010271
TCONS_00020298 mRNA downstream 437746 49601838 ~ 49618308 (+) False XLOC_010273
TCONS_00020299 mRNA downstream 437855 49601947 ~ 49613032 (+) True XLOC_010273
TCONS_00020300 mRNA downstream 483310 49647402 ~ 49661406 (+) False XLOC_010274
TCONS_00020301 mRNA downstream 483334 49647426 ~ 49661191 (+) True XLOC_010274
TCONS_00020274 other upstream 904289 48257013 ~ 48257130 (+) True XLOC_010261
TCONS_00020273 other upstream 1002996 48158309 ~ 48158423 (+) True XLOC_010260
TCONS_00020272 other upstream 1138011 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020265 other upstream 2148962 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020229 other upstream 3494567 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020297 other downstream 383679 49547771 ~ 49547886 (+) True XLOC_010272
TCONS_00020308 other downstream 1076231 50240323 ~ 50254974 (+) True XLOC_010278
TCONS_00020312 other downstream 1343084 50507176 ~ 50507295 (+) True XLOC_010284
TCONS_00020313 other downstream 1576888 50740980 ~ 50803345 (+) False XLOC_010281
TCONS_00020323 other downstream 2017979 51182071 ~ 51183994 (+) True XLOC_010292

Expression Profile

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