RNA id: TCONS_00020298


Basic Information

Item Value
RNA id TCONS_00020298
length 746
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_010273
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 49601609 ~ 49618621 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTTCGGGATTGCGCAACTTTAATTGTAATGCGCGTCCGTGATGCAACGACTCGCGTGTTTGGCTGCACGTCGGGAACTCGCATCTCTTGCCATTCGGTGGAATAGGAATATTTTGTATCCTAAACACGAGACCCTTTGCCAACCGTGGTGGCATCAGCGCGCGCGCGCTCATGCCATCTGCGTGACCTCTCCAGAGCGCGCATGGCATCACCTGCGCAGACGGTGTGCGCAGTTCAGCGGTCAGCAGCGCAGATATAATAGTAAAGATGCAGACAAGAAGGACTCTGGGCGTCCTGTCATCACCGTGGTGGGCACACCAGACCCCATCCTGTGGATCAGGAATAAAGTCATCTTATTTTTAACCGAACTGTACTTTGGCTTGAAGTTCAATGTGGAGTTTGACAATGGTGTGAAACAGGCTGCGGTTCATGTGTCTGACTTGCTGTCCAAAGGCAACTTTGAGGAGTTGAGGAGTGTGATGTCCAGAGAGGCTGTGGAGAATATCAGAAAGAAGTGTAGAGCACTTTCAGAGACCCAAAAAAGACAGCTTGCCATTTCTCTTGACGACATTATATTTGTTCTGCCTGAGGATGTGTCTGTATTCTTTGACCAGAGAGGTTTTATCAGGAGTTGAGCGCTGGAGGGAATCCGGAGTGGACGGTGACCCGATTATGGCACTGGAAACAACTGGAGTAAACTAAAGACGCAACAAAACTGACTTTACAGAATAAAATGGTGGTCATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-141222-46 Predicted to enable ribosome binding activity. Predicted to be involved in inner mitochondrial membrane organization and protein insertion into mitochondrial inner membrane from matrix. Predicted to be active in mitochondrial inner membrane.

Ensembl:

ensembl_id ENSDART00000168570

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022038 lncRNA upstream 437746 49161419 ~ 49164092 (+) True XLOC_010270
TCONS_00020283 lncRNA upstream 924804 48671357 ~ 48677034 (+) False XLOC_010264
TCONS_00020305 lncRNA downstream 482112 50100420 ~ 50101911 (+) False XLOC_010276
TCONS_00021757 lncRNA downstream 617072 50235380 ~ 50260317 (+) False XLOC_010278
TCONS_00022040 lncRNA downstream 622012 50240320 ~ 50260134 (+) False XLOC_010278
TCONS_00021758 lncRNA downstream 622012 50240320 ~ 50260134 (+) False XLOC_010278
TCONS_00022041 lncRNA downstream 681372 50299680 ~ 50347897 (+) True XLOC_010280
TCONS_00020296 mRNA upstream 348264 49249669 ~ 49253574 (+) True XLOC_010271
TCONS_00020291 mRNA upstream 441657 49088698 ~ 49160181 (+) False XLOC_010269
TCONS_00020300 mRNA downstream 29094 49647402 ~ 49661406 (+) False XLOC_010274
TCONS_00020301 mRNA downstream 29118 49647426 ~ 49661191 (+) True XLOC_010274
TCONS_00020302 mRNA downstream 387837 50006145 ~ 50078469 (+) False XLOC_010275
TCONS_00020303 mRNA downstream 388564 50006872 ~ 50065076 (+) True XLOC_010275
TCONS_00020304 mRNA downstream 471109 50089417 ~ 50111057 (+) False XLOC_010276
TCONS_00020297 other upstream 53952 49547771 ~ 49547886 (+) True XLOC_010272
TCONS_00020274 other upstream 1344708 48257013 ~ 48257130 (+) True XLOC_010261
TCONS_00020273 other upstream 1443415 48158309 ~ 48158423 (+) True XLOC_010260
TCONS_00020272 other upstream 1578430 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020265 other upstream 2589381 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020308 other downstream 622015 50240323 ~ 50254974 (+) True XLOC_010278
TCONS_00020312 other downstream 888868 50507176 ~ 50507295 (+) True XLOC_010284
TCONS_00020313 other downstream 1122672 50740980 ~ 50803345 (+) False XLOC_010281
TCONS_00020323 other downstream 1563763 51182071 ~ 51183994 (+) True XLOC_010292
TCONS_00020324 other downstream 1574347 51192655 ~ 51213890 (+) False XLOC_010293

Expression Profile

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