RNA id: TCONS_00020324



Basic Information


Item Value
RNA id TCONS_00020324
length 966
RNA type processed_transcript
GC content 0.46
exon number 3
gene id XLOC_010293
representative False

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 51192655 ~ 51214029 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGCGTGCACGACTCCGCCCCCAACTCAATGTATAGGCGGACTGGTCTTCATATAACGTGGAGGAACATCGTGTGCTTGTGAGTTTCCTGCACATTTCAGCTCGAGACGGTGCGCACAGGTTCAGGCTTTTGGCTTAAACGTCCATAAGGAGCTTCAGTTTGGTCGTGTGGTGAATACAAAAAATCCTGCAGCGATGATCATCAGACTGGGCAGACTGACTCCTGGATACTTCCGTCTTTTGCAGCGGCAGGTAGCAGGAGAAGTCCAGGCCCCGGTGCATGACCGCTCCGTCAACCAGATCGCCATGATGCTGGCCATCATGGGTCTCAGCCTGTCCTATTACAGCGCCAAACAGATGACAGAGAAAGTTCGCCAAGAACCTGCGATatgaagacacacaaacacactccgaAATGACACGGAGAGACACCCAAGCCAAACTGAATATGCAATTTCAGACTCTGTCACCGTTTCTGGATCTAAAATCACAGCACCGGGTTTCTACTTCAGGACTCTCTTGCTTTAGTTTAGCTCTCAGTGGGGTTTCTGGAGGGGAATTCTTGTGGCTTGAGTTTCGATAGTTGATATTGTACATGCACCAGAGTCTCAGTTACTCAAGTTGTAGGCTTTTCTCAATGCATGAGGAAATATGGAGGAAATCTCCGAGCCATAATGTGTTAAAGGGAAGGAGCTCTGCGTTAGAGATGTACCATTCGACTATTGAAAGCACAGCCCAATGCACAATGGTGGTTTTAGTTTTGATATGCAATTGAGGAGCGTCTCTGAGGTATTCAATACTACTCTTTTTGTGTTAGACACTTTATCGTTGGAGGACCTTGTATTTTCATTATGATTTCATATCATCTCGTCTGAGAGACTCCCAACACTTTAGATGTTAACCGTGTGCAATTGCATGAAGATTTTAGTGAGTCTAATGTACGTGTTGTTttctaatgcttttttttt

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000168162

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00022047 lncRNA upstream 108003 51077072 ~ 51084652 (+) True XLOC_010290
TCONS_00022046 lncRNA upstream 551735 50633998 ~ 50640920 (+) True XLOC_010287
TCONS_00022045 lncRNA upstream 581491 50608762 ~ 50611164 (+) True XLOC_010286
TCONS_00022044 lncRNA upstream 604330 50587236 ~ 50588325 (+) True XLOC_010285
TCONS_00022043 lncRNA upstream 720238 50469884 ~ 50472417 (+) True XLOC_010283
TCONS_00022048 lncRNA downstream 11557 51225447 ~ 51229303 (+) True XLOC_010294
TCONS_00021759 lncRNA downstream 345242 51559132 ~ 51640808 (+) False XLOC_010297
TCONS_00020329 lncRNA downstream 345242 51559132 ~ 51667338 (+) False XLOC_010297
TCONS_00020330 lncRNA downstream 345242 51559132 ~ 51707952 (+) True XLOC_010297
TCONS_00021760 lncRNA downstream 847051 52060941 ~ 52062972 (+) True XLOC_010299
TCONS_00020322 mRNA upstream 8529 51180938 ~ 51184126 (+) False XLOC_010292
TCONS_00020320 mRNA upstream 14387 51154918 ~ 51178268 (+) False XLOC_010291
TCONS_00020321 mRNA upstream 14519 51159775 ~ 51178136 (+) True XLOC_010291
TCONS_00020318 mRNA upstream 211927 50969248 ~ 50980728 (+) False XLOC_010289
TCONS_00020319 mRNA upstream 212208 50972803 ~ 50980447 (+) True XLOC_010289
TCONS_00020327 mRNA downstream 112347 51326237 ~ 51331520 (+) True XLOC_010295
TCONS_00020328 mRNA downstream 248730 51462620 ~ 51528483 (+) True XLOC_010296
TCONS_00020332 mRNA downstream 891337 52105227 ~ 52130711 (+) False XLOC_010300
TCONS_00020333 mRNA downstream 891388 52105278 ~ 52226144 (+) True XLOC_010300
TCONS_00020334 mRNA downstream 1130015 52343905 ~ 52371175 (+) True XLOC_010302
TCONS_00020323 other upstream 8661 51182071 ~ 51183994 (+) True XLOC_010292
TCONS_00020313 other upstream 389310 50740980 ~ 50803345 (+) False XLOC_010281
TCONS_00020312 other upstream 685360 50507176 ~ 50507295 (+) True XLOC_010284
TCONS_00020308 other upstream 937681 50240323 ~ 50254974 (+) True XLOC_010278
TCONS_00020297 other upstream 1644769 49547771 ~ 49547886 (+) True XLOC_010272
TCONS_00020331 other downstream 562646 51776536 ~ 51776640 (+) True XLOC_010298
TCONS_00020338 other downstream 1534416 52748306 ~ 52757398 (+) False XLOC_010305
TCONS_00020349 other downstream 2010634 53224524 ~ 53247309 (+) True XLOC_010313
TCONS_00020353 other downstream 2111695 53325585 ~ 53326123 (+) False XLOC_010316
TCONS_00020354 other downstream 2111722 53325612 ~ 53326381 (+) True XLOC_010316

Expression Profile


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