XLOC_010291 (dhdds)


Basic Information

Item Value
gene id XLOC_010291
gene name dhdds
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 51154918 ~ 51178268 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020320
GTCGTCATGTCCTGTCAGCGGAAGAAGGCGTCATCTTACAGACAGGCTAAAGGGCTGTCATGTCGTGGATTCGAGAGGAGAAACTGTCCCTTTTAGAAAGGCTCACTGCCAACATCTTAAAGGCAGGGCCAATGCCCAAACATGTGGCGTTTATCATGGATGGGAACAGGCGTTATGCCCAAAAGGAGCATAAGGAGAGGCAGGAGGGCCACACACAGGGCTTTGAGAAACTTGCGGAGACGCTGCGCTGGTGCCTAAACCTGGGCATCCATGAGGTGACCGTATATGCGTTCAGCATCGAGAACTTCAAGCGATCAAAGGAGGAGGTGGACGGCCTGATGGAGCTGGCCAGACAGAAGTTCAGCCGCCTGCTGACAGAGCAGGAGAATCTTGAGAAGCACGGTGTGTGTATTCGTGTGCTGGGAGATCTGACTCTGCTGCCTGAAGATCTGCAGACACTTATTGCCAAAGCTGTCGTGTCAACCAGAGCGCACAACAAGTGTTTTCTGAATGTGTGTTTTGCTTACACGTCGAGACATGAAATTGCAAATGCAGTGAAGGAAATGGCATGGGGAGTCGAGCAGGGACTGATCAAATCCAGCGACGTGTCTGAAGTTCTCCTGAGTGAGTGTCTGTATAGCAGTAATTCTCCAAACCCTGATCTGCTCATCCGTACATCTGGAGAAGTGCGTCTCAGTGACTTCTTACTGTGGCAGACCTCGTATTCGTGTCTGGTGTTCCAGTCGGTCCTGTGGCCCGAATATTCCTTCTGGAATCTGTGTGAGGCTATTTTGCAGTTCCAGCTGAGTCATCGATCAATCCAGAAAGCCCGGGAGCTGCACAGAGAAGAGCAAGTGCTTCAACAGATGGAGTCGGATCGCACCTGTGTGGCTGAAATCCTCCAGCATCGCGGCAATGGAAAGCCTATGGATGGTCAGAGTCAGCAGAACGCACTGCTGAACTACAGCAGCAGCCGTGAGGAGAGGGTTCGAGGCTTTCTGAACGCCCTGCAGCACAAGAGAGACGCTTTCTTCGATGATTTAAGCAGCCAGGCTGTTGTGGCTTAGCGATGAACTGTTTATCTGCTGATCTGTGAATACTGTAGATCTGGAAGGACGCTTCACCCCGTTTTATGGGGCAATGGTTATGTATACTTGATATTTGAATAGAAATCTGGGAATAAATTCGCTTTGATTGAG
>TCONS_00020321
ggtcagttggcgttattgtgtggagtttgcatgttctccctgcgtttacatgggtttcctctgggtgctccggtttcccccacagtccaaagacatgcggtacaggtgaattgggttggctaaattgtccatagtgaatgagtgtgtggatgtttcccagagatgggttgcagctggaagggtgtgaGCTGCGtacaacatgtgctggataagttggcggttcattctgctgtggcgaccccagattaacaaagggactaagctgaaaataaatgaatgaatattaatttctAAAGAACTAAACAGGAAATGCGGgaacaattaaaatgttttagatttttattttatatattatttattgctgttattgGTGTCTTTTTATTGTTCtataaatttttaatattttagaaaagtgATGTTTATAAAACAGCCAGAGGAGCTGAAATTGCTATAAATGCAGAaaactctctctcgctctctctttccaCCACATCCATTAAAATATCCTACATAGATCATACAAACTGCTACAATTAGTAACTGATTTGTTTTTCCACAGAAAGGGCTGTCATGTCGTGGATTCGAGAGGAGAAACTGTCCCTTTTAGAAAGGCTCACTGCCAACATCTTAAAGGCAGGGCCAATGCCCAAACATGTGGCGTTTATCATGGATGGGAACAGGCGTTATGCCCAAAAGGAGCATAAGGAGAGGCAGGAGGGCCACACACAGGGCTTTGAGAAACTTGCGGAGACGCTGCGCTGGTGCCTAAACCTGGGCATCCATGAGGTGACCGTATATGCGTTCAGCATCGAGAACTTCAAGCGATCAAAGGAGGAGGTGGACGGCCTGATGGAGCTGGCCAGACAGAAGTTCAGCCGCCTGCTGACAGAGCAGGAGAATCTTGAGAAGCACGGTGTGTGTATTCGTGTGCTGGGAGATCTGACTCTGCTGCCTGAAGATCTGCAGACACTTATTGCCAAAGCTGTCGTGTCAACCAGAGCGCACAACAAGTGTTTTCTGAATGTGTGTTTTGCTTACACGTCGAGACATGAAATTGCAAATGCAGTGAAGGAAATGGCATGGGGAGTCGAGCAGGGACTGATCAAATCCAGCGACGTGTCTGAAGTTCTCCTGAGTGAGTGTCTGTATAGCAGTAATTCTCCAAACCCTGATCTGCTCATCCGTACATCTGGAGAAGTGCGTCTCAGTGACTTCTTACTGTGGCAGACCTCGTATTCGTGTCTGGTGTTCCAGTCGGTCCTGTGGCCCGAATATTCCTTCTGGAATCTGTGTGAGGCTATTTTGCAGTTCCAGCTGAGTCATCGATCAATCCAGAAAGCCCGGGAGCTGCACAGAGAAGAGCAAGTGCTTCAACAGATGGAGTCGGATCGCACCTGTGTGGCTGAAATCCTCCAGCATCGCGGCAATGGAAAGCCTATGGATGGTCAGAGTCAGCAGAACGCACTGCTGAACTACAGCAGCAGCCGTGAGGAGAGGGTTCGAGGCTTTCTGAACGCCCTGCAGCACAAGAGAGACGCTTTCTTCGATGATTTAAGCAGCCAGGCTGTTGTGGCTTAG

Function

symbol description
dhdds Predicted to enable dehydrodolichyl diphosphate synthase activity and polyprenyltransferase activity. Acts upstream of or within detection of light stimulus involved in visual perception and eye photoreceptor cell development. Predicted to be part of dehydrodolichyl diphosphate synthase complex. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in developmental delay and seizures with or without movement abnormalities and retinitis pigmentosa 59. Orthologous to human DHDDS (dehydrodolichyl diphosphate synthase subunit).

GO:

id name namespace
GO:0016094 polyprenol biosynthetic process biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:1904423 dehydrodolichyl diphosphate synthase complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups molecular_function
GO:0045547 dehydrodolichyl diphosphate synthase activity molecular_function
GO:0002094 polyprenyltransferase activity molecular_function

KEGG:

id description
ko00900 Terpenoid backbone biosynthesis
ko01006 Prenyltransferases

ZFIN:

id description
ZDB-GENE-040426-2236 Predicted to enable dehydrodolichyl diphosphate synthase activity and polyprenyltransferase activity. Acts upstream of or within detection of light stimulus involved in visual perception and eye photoreceptor cell development. Predicted to be part of dehydrodolichyl diphosphate synthase complex. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in developmental delay and seizures with or without movement abnormalities and retinitis pigmentosa 59. Orthologous to human DHDDS (dehydrodolichyl diphosphate synthase subunit).

Ensembl:

ensembl_id ENSDARG00000039851

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020320 False 1199 mRNA 0.50 9 51154918 51178268
TCONS_00020321 True 1578 mRNA 0.47 8 51159775 51178136

Neighbor

gene id symbol gene type direction distance location
XLOC_010290 NA coding upstream 70266 51077072 ~ 51084652 (+)
XLOC_010289 si:dkeyp-97a10.2 coding upstream 174190 50969248 ~ 50980728 (+)
XLOC_010288 si:dkeyp-97a10.1 coding upstream 186168 50953547 ~ 50968750 (+)
XLOC_010287 NA coding upstream 513998 50633998 ~ 50640920 (+)
XLOC_010286 NA coding upstream 543754 50608762 ~ 50611164 (+)
XLOC_010292 hmgn2 coding downstream 2670 51180938 ~ 51184126 (+)
XLOC_010293 FQ323156.1 coding downstream 14387 51192655 ~ 51214029 (+)
XLOC_010294 NA coding downstream 47179 51225447 ~ 51229303 (+)
XLOC_010295 C16H1orf232 coding downstream 147969 51326237 ~ 51331520 (+)
XLOC_010296 SLC9A1 coding downstream 284352 51462620 ~ 51528483 (+)
XLOC_010285 NA non-coding upstream 566593 50587236 ~ 50588325 (+)
XLOC_010284 LO018415.1 non-coding upstream 647623 50507176 ~ 50507295 (+)
XLOC_010297 NA non-coding downstream 380864 51559132 ~ 51707952 (+)
XLOC_010298 dre-mir-455-2 non-coding downstream 598268 51776536 ~ 51776640 (+)
XLOC_010299 NA non-coding downstream 882673 52060941 ~ 52062972 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location