RNA id: TCONS_00020321


Basic Information

Item Value
RNA id TCONS_00020321
length 1578
RNA type mRNA
GC content 0.47
exon number 8
gene id XLOC_010291
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 51154918 ~ 51178268 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggtcagttggcgttattgtgtggagtttgcatgttctccctgcgtttacatgggtttcctctgggtgctccggtttcccccacagtccaaagacatgcggtacaggtgaattgggttggctaaattgtccatagtgaatgagtgtgtggatgtttcccagagatgggttgcagctggaagggtgtgaGCTGCGtacaacatgtgctggataagttggcggttcattctgctgtggcgaccccagattaacaaagggactaagctgaaaataaatgaatgaatattaatttctAAAGAACTAAACAGGAAATGCGGgaacaattaaaatgttttagatttttattttatatattatttattgctgttattgGTGTCTTTTTATTGTTCtataaatttttaatattttagaaaagtgATGTTTATAAAACAGCCAGAGGAGCTGAAATTGCTATAAATGCAGAaaactctctctcgctctctctttccaCCACATCCATTAAAATATCCTACATAGATCATACAAACTGCTACAATTAGTAACTGATTTGTTTTTCCACAGAAAGGGCTGTCATGTCGTGGATTCGAGAGGAGAAACTGTCCCTTTTAGAAAGGCTCACTGCCAACATCTTAAAGGCAGGGCCAATGCCCAAACATGTGGCGTTTATCATGGATGGGAACAGGCGTTATGCCCAAAAGGAGCATAAGGAGAGGCAGGAGGGCCACACACAGGGCTTTGAGAAACTTGCGGAGACGCTGCGCTGGTGCCTAAACCTGGGCATCCATGAGGTGACCGTATATGCGTTCAGCATCGAGAACTTCAAGCGATCAAAGGAGGAGGTGGACGGCCTGATGGAGCTGGCCAGACAGAAGTTCAGCCGCCTGCTGACAGAGCAGGAGAATCTTGAGAAGCACGGTGTGTGTATTCGTGTGCTGGGAGATCTGACTCTGCTGCCTGAAGATCTGCAGACACTTATTGCCAAAGCTGTCGTGTCAACCAGAGCGCACAACAAGTGTTTTCTGAATGTGTGTTTTGCTTACACGTCGAGACATGAAATTGCAAATGCAGTGAAGGAAATGGCATGGGGAGTCGAGCAGGGACTGATCAAATCCAGCGACGTGTCTGAAGTTCTCCTGAGTGAGTGTCTGTATAGCAGTAATTCTCCAAACCCTGATCTGCTCATCCGTACATCTGGAGAAGTGCGTCTCAGTGACTTCTTACTGTGGCAGACCTCGTATTCGTGTCTGGTGTTCCAGTCGGTCCTGTGGCCCGAATATTCCTTCTGGAATCTGTGTGAGGCTATTTTGCAGTTCCAGCTGAGTCATCGATCAATCCAGAAAGCCCGGGAGCTGCACAGAGAAGAGCAAGTGCTTCAACAGATGGAGTCGGATCGCACCTGTGTGGCTGAAATCCTCCAGCATCGCGGCAATGGAAAGCCTATGGATGGTCAGAGTCAGCAGAACGCACTGCTGAACTACAGCAGCAGCCGTGAGGAGAGGGTTCGAGGCTTTCTGAACGCCCTGCAGCACAAGAGAGACGCTTTCTTCGATGATTTAAGCAGCCAGGCTGTTGTGGCTTAG

Function

GO:

id name namespace
GO:0016094 polyprenol biosynthetic process biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:1904423 dehydrodolichyl diphosphate synthase complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups molecular_function
GO:0045547 dehydrodolichyl diphosphate synthase activity molecular_function
GO:0002094 polyprenyltransferase activity molecular_function

KEGG:

id description
ko00900 Terpenoid backbone biosynthesis
ko01006 Prenyltransferases

ZFIN:

id description
ZDB-GENE-040426-2236 Predicted to enable dehydrodolichyl diphosphate synthase activity and polyprenyltransferase activity. Acts upstream of or within detection of light stimulus involved in visual perception and eye photoreceptor cell development. Predicted to be part of dehydrodolichyl diphosphate synthase complex. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in developmental delay and seizures with or without movement abnormalities and retinitis pigmentosa 59. Orthologous to human DHDDS (dehydrodolichyl diphosphate synthase subunit).

Ensembl:

ensembl_id ENSDART00000161924

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022047 lncRNA upstream 75123 51077072 ~ 51084652 (+) True XLOC_010290
TCONS_00022046 lncRNA upstream 518855 50633998 ~ 50640920 (+) True XLOC_010287
TCONS_00022045 lncRNA upstream 548611 50608762 ~ 50611164 (+) True XLOC_010286
TCONS_00022044 lncRNA upstream 571450 50587236 ~ 50588325 (+) True XLOC_010285
TCONS_00022043 lncRNA upstream 687358 50469884 ~ 50472417 (+) True XLOC_010283
TCONS_00022048 lncRNA downstream 47311 51225447 ~ 51229303 (+) True XLOC_010294
TCONS_00021759 lncRNA downstream 380996 51559132 ~ 51640808 (+) False XLOC_010297
TCONS_00020329 lncRNA downstream 380996 51559132 ~ 51667338 (+) False XLOC_010297
TCONS_00020330 lncRNA downstream 380996 51559132 ~ 51707952 (+) True XLOC_010297
TCONS_00021760 lncRNA downstream 882805 52060941 ~ 52062972 (+) True XLOC_010299
TCONS_00020318 mRNA upstream 179047 50969248 ~ 50980728 (+) False XLOC_010289
TCONS_00020319 mRNA upstream 179328 50972803 ~ 50980447 (+) True XLOC_010289
TCONS_00020316 mRNA upstream 191025 50953547 ~ 50968750 (+) False XLOC_010288
TCONS_00020317 mRNA upstream 191039 50953842 ~ 50968736 (+) True XLOC_010288
TCONS_00020314 mRNA upstream 335306 50741154 ~ 50824469 (+) False XLOC_010281
TCONS_00020322 mRNA downstream 2802 51180938 ~ 51184126 (+) False XLOC_010292
TCONS_00020327 mRNA downstream 148101 51326237 ~ 51331520 (+) True XLOC_010295
TCONS_00020328 mRNA downstream 284484 51462620 ~ 51528483 (+) True XLOC_010296
TCONS_00020332 mRNA downstream 927091 52105227 ~ 52130711 (+) False XLOC_010300
TCONS_00020333 mRNA downstream 927142 52105278 ~ 52226144 (+) True XLOC_010300
TCONS_00020313 other upstream 356430 50740980 ~ 50803345 (+) False XLOC_010281
TCONS_00020312 other upstream 652480 50507176 ~ 50507295 (+) True XLOC_010284
TCONS_00020308 other upstream 904801 50240323 ~ 50254974 (+) True XLOC_010278
TCONS_00020297 other upstream 1611889 49547771 ~ 49547886 (+) True XLOC_010272
TCONS_00020274 other upstream 2902645 48257013 ~ 48257130 (+) True XLOC_010261
TCONS_00020323 other downstream 3935 51182071 ~ 51183994 (+) True XLOC_010292
TCONS_00020324 other downstream 14519 51192655 ~ 51213890 (+) False XLOC_010293
TCONS_00020325 other downstream 14875 51193011 ~ 51213971 (+) False XLOC_010293
TCONS_00020326 other downstream 26373 51204509 ~ 51214029 (+) True XLOC_010293
TCONS_00020331 other downstream 598400 51776536 ~ 51776640 (+) True XLOC_010298

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000086_01150842_01165271.mRNA False 1612 mRNA 0.46 12 CI01000086 1150842 ~ 1165756 (+)