RNA id: TCONS_00020334


Basic Information

Item Value
RNA id TCONS_00020334
length 2279
RNA type mRNA
GC content 0.45
exon number 7
gene id XLOC_010302
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 52343905 ~ 52371175 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAACCTGAATTTCGAGTTGAGAAAGCTCTTTAATACACCTCTGAATGGGCGGAGGCAGAAAACAGGAACGTGCTGCTGATAAGACGTGGATCCAAAGTTCACACACGCACCTGAGGATGTGGAGATTTCCTTCAGCAGGTCATGTGGAAGGCAGCGGAGACTAATCACAGTGAATGAATAATGTCCTGTTCAGCCTAATGGGATTTTTCTCTTGTTTCTGGAAGTCAAATATCTGGGAAGCGTCCTGAGGAAATTATGAGAGGACTGTGATGTTAATTTAAGTTTCTGGATTGGAGATATTTTCACATGTCTGGAGATGTGTCCGCTGGGAACTGCCATGTTTTTGCTCTGTTGTGTTGgttgttggtgccaaaacTGTAACCTGACGAAGCCTTATTTCAAGTCCCAGAATTTCTTCAGCGTTCTCCATTGGGATCCTGTTGACCTTCCAGGTCAAACGGCTCTTTACAGTGTCCAGTACAGCCCGTATGGCAGTCCTCGTCAGCTGGTTCCGTGGTGCCAGAACATCTCATCTCCAGTGTGTGATCTGACTGATGTGATGAGTGCAGTGGTGACCGAAGTCACCATCACATATAAAGCCATTGTATATGCAGGCGCACAGTGTCTGGGTGAAGTGAGGTTCTCTCCGTTTAAAGAAACCACATTAGCGGCACCGCAGCTGACCGTAACCTCAAACCAAACCCATCTGAATGTGACTCTTTCTAAGCCGAGGGTTCCGTGGAATCGCTCCATTGAGAGCATAAAGTATTGGGCGGACTACAGGGATGTGAAACGATACCCTGTTAAATACATTGTTCGTCTGACCCATCCCGGATCACAGGAATATTTTAGCAGGACGTCTCCTTCAGTGTTGATCGAGCTGCTATGGAAAGATGTGGAGTATTGTGGCGAAGTGTTTTATTCGCTCACTCATCCCGGCTGGTTCAGACCCAGTGAAAACACCACCTTCTGTCTCACCGTCTCAGCTCCTAATCCGTTGCTCCATATCTTAATGTGGCCCAGTGTGCTGGCTGCGCTGCTGATGGTCTTCCTATCCGTCATGCTCTGCCATCGCTTTGTGAAACGAAAGCGCTCCTTACCGAAAGCTCTGATGCTGCCAGAAaacaacacacctcctttttggtcCGATCCCAAAGACAACATATCTAAAGTGGAAATGTGGTCCGGAATGTTTTTTGGGATGAAGCCTGATCCACAAACTCCGTCTTTAACTCCGCAAAAGTCTGAGATCACAGTTAAAGATAATGCATACGCATCCCAGGAGCCTTACCGATGCCAACAGGACGGCCAGATTCAGAATAGCAGAGAGCCATCAGAGAACTACAGCCTCTGTTTACCTGCTCAGATGCCCAAAGAATCATTTAACAGCTCTGATTCATTCAGTCCAGAGTCTGAGTCGCctaaaatgattcattcagataCCAGTGAATCATTAAACAACTCTGATACGTTCACTCCAAAGTCTGATTCTGTTAAATTGATTCAATCAGATGCCAATGAATCATTTAACAACTCCGAATCACTCAGTTCAGATTCTGATTTAGTTGAATTGATTCATTTGGACACCAATGAATCATTTAGCAGCTCTGATTCATTCATTCCAGTGACTGATTCagttgaattcattcattcagacgCTGAATGCAAGACTCTAGTGGTTCCAGCGAGGCCTGATAAGAATGGTGCATTACAGTTTCACGAGCTTTTCTTTCAAGATGAATCTTTTCCAGATGAATCAGCTGAACGAATGCCTTTATTAACTGATCTCATTCAGAGTGATTCATCTTACCTGCCTGGACAGGTTCCTAATGTAGTAACGTCAAACTACAAGCAGAATTGGGTGCCTGGACTTCTTCTGGAAGGACAAGAAGACAAAAGAACTTATATAATGAGGACAGAAAAGACTGAGGATATGCCTGAAGCTGAGGAGGACTTCAGAGAGTCGGAAGAGTCTCGAATCGGGGTGGTTTTCCTGGACAGATGTTTGCTGGAGATTCAGGGTTTGTCTCTGTCGTGATAATGACCGATGGAGGTTGTTTTGCTCTGTTCATCCATGCAAGACACAGAGGAATGAACATCTGTTGGGTTTTGCCGACTCGTTGCATCAGGTGGACGTGACTGAGGGAAATGAACATTTGAGGTCATTTCACACAATACACTGAAGAGATTTACTAATGCAGTTATGCAGTGTTTTGGACTATTGATGTAGTTTGGGCCAGATTTACTTGAAGTTGGAGACAAATAATTCATGTTTAT

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0048884 neuromast development biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-071120-5 Predicted to enable cytokine receptor activity. Acts upstream of or within neuromast development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human IFNLR1 (interferon lambda receptor 1).

Ensembl:

ensembl_id ENSDART00000131051

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022049 lncRNA upstream 111564 52230494 ~ 52232341 (+) True XLOC_010301
TCONS_00021760 lncRNA upstream 280933 52060941 ~ 52062972 (+) True XLOC_010299
TCONS_00020330 lncRNA upstream 635953 51559132 ~ 51707952 (+) True XLOC_010297
TCONS_00020329 lncRNA upstream 676567 51559132 ~ 51667338 (+) False XLOC_010297
TCONS_00021759 lncRNA upstream 703097 51559132 ~ 51640808 (+) False XLOC_010297
TCONS_00020335 lncRNA downstream 14419 52385594 ~ 52410592 (+) True XLOC_010303
TCONS_00021761 lncRNA downstream 695311 53066486 ~ 53102998 (+) True XLOC_010310
TCONS_00020347 lncRNA downstream 814972 53186147 ~ 53191488 (+) True XLOC_010312
TCONS_00022050 lncRNA downstream 1182050 53553225 ~ 53554066 (+) True XLOC_010322
TCONS_00020363 lncRNA downstream 1197896 53569071 ~ 53573661 (+) False XLOC_010323
TCONS_00020333 mRNA upstream 117761 52105278 ~ 52226144 (+) True XLOC_010300
TCONS_00020332 mRNA upstream 213194 52105227 ~ 52130711 (+) False XLOC_010300
TCONS_00020328 mRNA upstream 815422 51462620 ~ 51528483 (+) True XLOC_010296
TCONS_00020327 mRNA upstream 1012385 51326237 ~ 51331520 (+) True XLOC_010295
TCONS_00020322 mRNA upstream 1159779 51180938 ~ 51184126 (+) False XLOC_010292
TCONS_00020336 mRNA downstream 140850 52512025 ~ 52516915 (+) True XLOC_010304
TCONS_00020337 mRNA downstream 377088 52748263 ~ 52767591 (+) False XLOC_010305
TCONS_00020339 mRNA downstream 380270 52751445 ~ 52767058 (+) True XLOC_010305
TCONS_00020340 mRNA downstream 400024 52771199 ~ 52776806 (+) True XLOC_010306
TCONS_00020341 mRNA downstream 475904 52847079 ~ 52864785 (+) True XLOC_010307
TCONS_00020331 other upstream 567265 51776536 ~ 51776640 (+) True XLOC_010298
TCONS_00020326 other upstream 1129876 51204509 ~ 51214029 (+) True XLOC_010293
TCONS_00020325 other upstream 1129934 51193011 ~ 51213971 (+) False XLOC_010293
TCONS_00020324 other upstream 1130015 51192655 ~ 51213890 (+) False XLOC_010293
TCONS_00020323 other upstream 1159911 51182071 ~ 51183994 (+) True XLOC_010292
TCONS_00020338 other downstream 377131 52748306 ~ 52757398 (+) False XLOC_010305
TCONS_00020349 other downstream 853349 53224524 ~ 53247309 (+) True XLOC_010313
TCONS_00020353 other downstream 954410 53325585 ~ 53326123 (+) False XLOC_010316
TCONS_00020354 other downstream 954437 53325612 ~ 53326381 (+) True XLOC_010316
TCONS_00020362 other downstream 1171180 53542355 ~ 53542469 (+) True XLOC_010321

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000086_01721518_01734414.mRNA True 1562 mRNA 0.46 5 CI01000086 1721518 ~ 1734710 (+)