XLOC_010302 (ifnlr1)


Basic Information

Item Value
gene id XLOC_010302
gene name ifnlr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 52343905 ~ 52371175 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020334
ATAAACCTGAATTTCGAGTTGAGAAAGCTCTTTAATACACCTCTGAATGGGCGGAGGCAGAAAACAGGAACGTGCTGCTGATAAGACGTGGATCCAAAGTTCACACACGCACCTGAGGATGTGGAGATTTCCTTCAGCAGGTCATGTGGAAGGCAGCGGAGACTAATCACAGTGAATGAATAATGTCCTGTTCAGCCTAATGGGATTTTTCTCTTGTTTCTGGAAGTCAAATATCTGGGAAGCGTCCTGAGGAAATTATGAGAGGACTGTGATGTTAATTTAAGTTTCTGGATTGGAGATATTTTCACATGTCTGGAGATGTGTCCGCTGGGAACTGCCATGTTTTTGCTCTGTTGTGTTGgttgttggtgccaaaacTGTAACCTGACGAAGCCTTATTTCAAGTCCCAGAATTTCTTCAGCGTTCTCCATTGGGATCCTGTTGACCTTCCAGGTCAAACGGCTCTTTACAGTGTCCAGTACAGCCCGTATGGCAGTCCTCGTCAGCTGGTTCCGTGGTGCCAGAACATCTCATCTCCAGTGTGTGATCTGACTGATGTGATGAGTGCAGTGGTGACCGAAGTCACCATCACATATAAAGCCATTGTATATGCAGGCGCACAGTGTCTGGGTGAAGTGAGGTTCTCTCCGTTTAAAGAAACCACATTAGCGGCACCGCAGCTGACCGTAACCTCAAACCAAACCCATCTGAATGTGACTCTTTCTAAGCCGAGGGTTCCGTGGAATCGCTCCATTGAGAGCATAAAGTATTGGGCGGACTACAGGGATGTGAAACGATACCCTGTTAAATACATTGTTCGTCTGACCCATCCCGGATCACAGGAATATTTTAGCAGGACGTCTCCTTCAGTGTTGATCGAGCTGCTATGGAAAGATGTGGAGTATTGTGGCGAAGTGTTTTATTCGCTCACTCATCCCGGCTGGTTCAGACCCAGTGAAAACACCACCTTCTGTCTCACCGTCTCAGCTCCTAATCCGTTGCTCCATATCTTAATGTGGCCCAGTGTGCTGGCTGCGCTGCTGATGGTCTTCCTATCCGTCATGCTCTGCCATCGCTTTGTGAAACGAAAGCGCTCCTTACCGAAAGCTCTGATGCTGCCAGAAaacaacacacctcctttttggtcCGATCCCAAAGACAACATATCTAAAGTGGAAATGTGGTCCGGAATGTTTTTTGGGATGAAGCCTGATCCACAAACTCCGTCTTTAACTCCGCAAAAGTCTGAGATCACAGTTAAAGATAATGCATACGCATCCCAGGAGCCTTACCGATGCCAACAGGACGGCCAGATTCAGAATAGCAGAGAGCCATCAGAGAACTACAGCCTCTGTTTACCTGCTCAGATGCCCAAAGAATCATTTAACAGCTCTGATTCATTCAGTCCAGAGTCTGAGTCGCctaaaatgattcattcagataCCAGTGAATCATTAAACAACTCTGATACGTTCACTCCAAAGTCTGATTCTGTTAAATTGATTCAATCAGATGCCAATGAATCATTTAACAACTCCGAATCACTCAGTTCAGATTCTGATTTAGTTGAATTGATTCATTTGGACACCAATGAATCATTTAGCAGCTCTGATTCATTCATTCCAGTGACTGATTCagttgaattcattcattcagacgCTGAATGCAAGACTCTAGTGGTTCCAGCGAGGCCTGATAAGAATGGTGCATTACAGTTTCACGAGCTTTTCTTTCAAGATGAATCTTTTCCAGATGAATCAGCTGAACGAATGCCTTTATTAACTGATCTCATTCAGAGTGATTCATCTTACCTGCCTGGACAGGTTCCTAATGTAGTAACGTCAAACTACAAGCAGAATTGGGTGCCTGGACTTCTTCTGGAAGGACAAGAAGACAAAAGAACTTATATAATGAGGACAGAAAAGACTGAGGATATGCCTGAAGCTGAGGAGGACTTCAGAGAGTCGGAAGAGTCTCGAATCGGGGTGGTTTTCCTGGACAGATGTTTGCTGGAGATTCAGGGTTTGTCTCTGTCGTGATAATGACCGATGGAGGTTGTTTTGCTCTGTTCATCCATGCAAGACACAGAGGAATGAACATCTGTTGGGTTTTGCCGACTCGTTGCATCAGGTGGACGTGACTGAGGGAAATGAACATTTGAGGTCATTTCACACAATACACTGAAGAGATTTACTAATGCAGTTATGCAGTGTTTTGGACTATTGATGTAGTTTGGGCCAGATTTACTTGAAGTTGGAGACAAATAATTCATGTTTAT

Function

symbol description
ifnlr1 Predicted to enable cytokine receptor activity. Acts upstream of or within neuromast development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human IFNLR1 (interferon lambda receptor 1).

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0048884 neuromast development biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-071120-5 Predicted to enable cytokine receptor activity. Acts upstream of or within neuromast development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human IFNLR1 (interferon lambda receptor 1).

Ensembl:

ensembl_id ENSDARG00000087131

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020334 True 2279 mRNA 0.45 7 52343905 52371175

Neighbor

gene id symbol gene type direction distance location
XLOC_010301 NA coding upstream 111564 52230494 ~ 52232341 (+)
XLOC_010300 MAN1C1 coding upstream 117761 52105227 ~ 52226144 (+)
XLOC_010299 NA coding upstream 280933 52060941 ~ 52062972 (+)
XLOC_010298 dre-mir-455-2 coding upstream 567265 51776536 ~ 51776640 (+)
XLOC_010297 NA coding upstream 635953 51559132 ~ 51707952 (+)
XLOC_010303 LO018250.1 coding downstream 14419 52385594 ~ 52410592 (+)
XLOC_010304 fabp10a coding downstream 140850 52512025 ~ 52516915 (+)
XLOC_010305 atp6v1c1a coding downstream 377088 52748263 ~ 52767591 (+)
XLOC_010306 baalca coding downstream 400024 52771199 ~ 52776806 (+)
XLOC_010307 cep72 coding downstream 475904 52847079 ~ 52864785 (+)
XLOC_010294 NA non-coding upstream 1114602 51225447 ~ 51229303 (+)
XLOC_010310 NA non-coding downstream 695311 53066486 ~ 53102998 (+)
XLOC_010312 FO905052.1 non-coding downstream 814972 53186147 ~ 53191488 (+)
XLOC_010316 CR848746.1 non-coding downstream 954410 53325585 ~ 53326381 (+)
XLOC_010321 CR759845.5 non-coding downstream 1171180 53542355 ~ 53542469 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000086_01721518_01734414 NA coding CI01000086 null 1721518 ~ 1734710 (+)