Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000171 |
| length | 796 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 4 |
| gene id | XLOC_000086 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 7556965 ~ 7561222 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041010-130 | Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be active in nucleus. Orthologous to human PCNP (PEST proteolytic signal containing nuclear protein). |
| ensembl_id | ENSDART00000146238 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000166 | lncRNA | upstream | 2784 | 7546683 ~ 7554215 (+) | True | XLOC_000085 |
| TCONS_00000161 | lncRNA | upstream | 17283 | 7529853 ~ 7539716 (+) | False | XLOC_000085 |
| TCONS_00000162 | lncRNA | upstream | 17283 | 7538408 ~ 7539716 (+) | False | XLOC_000085 |
| TCONS_00000159 | lncRNA | upstream | 33069 | 7517449 ~ 7523930 (+) | False | XLOC_000085 |
| TCONS_00003025 | lncRNA | upstream | 44237 | 7512529 ~ 7512762 (+) | True | XLOC_000084 |
| TCONS_00002810 | lncRNA | downstream | 111267 | 7672121 ~ 7674229 (+) | True | XLOC_000087 |
| TCONS_00003026 | lncRNA | downstream | 1012923 | 8573777 ~ 8575057 (+) | True | XLOC_000097 |
| TCONS_00000190 | lncRNA | downstream | 1014453 | 8575307 ~ 8577274 (+) | True | XLOC_000098 |
| TCONS_00000192 | lncRNA | downstream | 1026376 | 8587230 ~ 8590636 (+) | False | XLOC_000100 |
| TCONS_00003027 | lncRNA | downstream | 1026491 | 8587345 ~ 8590636 (+) | False | XLOC_000100 |
| TCONS_00000165 | mRNA | upstream | 2536 | 7546259 ~ 7554463 (+) | False | XLOC_000085 |
| TCONS_00000164 | mRNA | upstream | 6100 | 7540978 ~ 7550899 (+) | False | XLOC_000085 |
| TCONS_00000163 | mRNA | upstream | 6345 | 7538909 ~ 7550654 (+) | False | XLOC_000085 |
| TCONS_00000160 | mRNA | upstream | 17283 | 7517454 ~ 7539716 (+) | False | XLOC_000085 |
| TCONS_00000158 | mRNA | upstream | 108204 | 7414318 ~ 7448795 (+) | True | XLOC_000083 |
| TCONS_00000174 | mRNA | downstream | 118474 | 7679328 ~ 7680108 (+) | False | XLOC_000088 |
| TCONS_00000175 | mRNA | downstream | 118474 | 7679328 ~ 7683372 (+) | True | XLOC_000088 |
| TCONS_00000176 | mRNA | downstream | 395176 | 7956030 ~ 7961696 (+) | True | XLOC_000089 |
| TCONS_00000177 | mRNA | downstream | 427198 | 7988052 ~ 7989314 (+) | True | XLOC_000090 |
| TCONS_00000178 | mRNA | downstream | 549708 | 8110562 ~ 8163167 (+) | False | XLOC_000091 |
| TCONS_00000154 | other | upstream | 493056 | 7063837 ~ 7063943 (+) | True | XLOC_000081 |
| TCONS_00000149 | other | upstream | 769195 | 6787690 ~ 6787804 (+) | True | XLOC_000078 |
| TCONS_00000134 | other | upstream | 1371467 | 6182342 ~ 6185532 (+) | False | XLOC_000067 |
| TCONS_00000123 | other | upstream | 2054915 | 5497285 ~ 5502084 (+) | True | XLOC_000062 |
| TCONS_00000121 | other | upstream | 2106555 | 5438743 ~ 5450444 (+) | False | XLOC_000062 |
| TCONS_00000208 | other | downstream | 1593240 | 9154094 ~ 9155273 (+) | False | XLOC_000113 |
| TCONS_00000209 | other | downstream | 1594139 | 9154993 ~ 9155521 (+) | False | XLOC_000113 |
| TCONS_00000213 | other | downstream | 1657794 | 9218648 ~ 9221616 (+) | True | XLOC_000115 |
| TCONS_00000230 | other | downstream | 2490920 | 10051774 ~ 10054771 (+) | False | XLOC_000126 |
| TCONS_00000231 | other | downstream | 2490930 | 10051784 ~ 10058057 (+) | False | XLOC_000126 |
