RNA id: CI01000340_16835641_16841074.mRNA


Basic Information

Item Value
RNA id CI01000340_16835641_16841074.mRNA
length 972
RNA type mRNA
GC content 0.45
exon number 7
gene id CI01000340_16835641_16841074
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 16835250 ~ 16841074 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCTTGTAGAGGCCGGTGGGAAGCGAACACCCAATCCACATCATGCAGATGTTGCTGAGGAAGCTGGTGAAGAAGCTTTGGTGCCTCCCAAAATTCCCGATGGAGAGAAAGTTGATTTTGATGATATTCACCGTAAACGTATGGAGAAAGACCTGACAGAGCTACAGACTCTCATTGAAGCGCACTTCGAGGGCAGAAAGAAAGAAGAAGAAGAGCTAATCAGCCTCACCCAGCGGATTGAAGAAAAAGCACGAAAAGAGGAGGAAGAGGCCAAGAGGAAGGCTGACGATGACGCTAAGAAGAAAAAGGTTCTCGCAAGCTTTCAGTACACCGGATACATGCAAAGGACAGACAAAAGGGGCGGGCCTAAGAAGCAAACCGAGAGAGAGAAGAAAAAAACGATCCTGAGTGAACGCCGTAAGGAACTGAACATCGAAAACCTCGGCGCAGACAAGCTGAGAGAAACCGCAAACGAACTCTGGAAGTGGATGCGCCAGCTTGAAGCTGAGAAGTTTGAGCTGCAATACAGATACATGTGCCAGAAATATGAGGTGAGGCTTCCACAAAGTGCTGTTTTATAGCTTCACCAGATGAGGATGTTAGAGGGGAAAACAATAACATTGGGACAGGACGTTTATGACGTGTCATACAGCTATCAATTACATTCAGTCACACCCAGCACAGACTTGGCAGAATTCATGCGGGCAGGTTCCCAGAGATACAGTTTGATTGACATGAGAAGGAGGCAAAACAGTACGGCAATGATTCACCGAGATTGATTCATACGTGTGATTTTCTTATAGATCACTGTCCTCAGGAATCGAGTCAGCGATCATCAGAAAAAGTAAGTGGCTGTGAAATGGAGCTGATTTATCCATGCATTATCAAAAGCTACATTCACACCACAAACCAAAATGGCCAGTTTAGATTTTCTACTTTATTTTGGTGAGGTTGTTCACATGACCTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU569750 lncRNA downstream 21174 16813778 ~ 16814076 (-) True G496745
TU569749 lncRNA downstream 22300 16812731 ~ 16812950 (-) True G496744
TU569708 lncRNA downstream 55766 16778526 ~ 16779484 (-) True G496713
TU569740 lncRNA downstream 57520 16769114 ~ 16777730 (-) True G496735
TU569700 lncRNA downstream 102437 16732585 ~ 16732813 (-) True G496705
TU569789 lncRNA upstream 52945 16894019 ~ 16894238 (-) True G496784
TU569802 lncRNA upstream 87317 16928391 ~ 16966305 (-) False G496797
TU569826 lncRNA upstream 112692 16953766 ~ 16954687 (-) True G496808
TU569846 lncRNA upstream 116894 16957968 ~ 16958541 (-) True G496825
TU569803 lncRNA upstream 120319 16961393 ~ 16966305 (-) True G496797
CI01000340_16689196_16692384.mRNA mRNA downstream 141915 16689169 ~ 16693335 (-) True CI01000340_16689196_16692384
CI01000340_16672630_16676596.mRNA mRNA downstream 158628 16672555 ~ 16676622 (-) True CI01000340_16672630_16676596
CI01000340_16661934_16665857.mRNA mRNA downstream 168595 16661533 ~ 16666655 (-) True CI01000340_16661934_16665857
CI01000340_16656861_16660297.mRNA mRNA downstream 174953 16656508 ~ 16660297 (-) True CI01000340_16656861_16660297
CI01000340_16616356_16625161.mRNA mRNA downstream 210089 16615555 ~ 16625161 (-) True CI01000340_16616356_16625161
CI01000340_16851655_16855749.mRNA mRNA upstream 10337 16851411 ~ 16855749 (-) True CI01000340_16851655_16855749
CI01000340_16864476_16870042.mRNA mRNA upstream 23402 16864476 ~ 16870042 (-) True CI01000340_16864476_16870042
CI01000340_17053954_17065047.mRNA mRNA upstream 211303 17052377 ~ 17065047 (-) True CI01000340_17053954_17065047
CI01000340_17078619_17088012.mRNA mRNA upstream 237545 17078619 ~ 17088012 (-) True CI01000340_17078619_17088012
CI01000340_17094196_17104831.mRNA mRNA upstream 252642 17093716 ~ 17106787 (-) True CI01000340_17094196_17104831
TU569607 other downstream 315276 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 655165 16179988 ~ 16180085 (-) True G495611
TU568273 other downstream 1222687 15606741 ~ 15612563 (-) True G495475
TU567578 other downstream 2276227 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 2280082 14548727 ~ 14555168 (-) True G494879
TU569869 other upstream 202649 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 336418 17177492 ~ 17242739 (-) True G496853
TU570236 other upstream 1578244 18442995 ~ 18454680 (-) True G497176
TU570552 other upstream 2317795 19158869 ~ 19164472 (-) False G497442

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064526 True 1162 mRNA 0.43 12 NC_007117.7 54761141 ~ 54796072 (-)