RNA id: TU569869



Basic Information


Item Value
RNA id TU569869
length 1966
RNA type TUCP
GC content 0.35
exon number 1
gene id G496845
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 17043723 ~ 17045688 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTGCATGTAGATGTTCTATTGGTTGGTTTTCACATTGGTTGTACAGGATGACAAGAAGCTACACGAATCGCCAGAGGAAAGGCTTTCTTTTTCTTCACTGGCCGATGTGTTCATTTGTAGAAGGGGAATTCAAAGCATGCCAAAGCATCCACGAAAGGAATCGACAACACTGGAACTTCCACACAGGACAAACAGAAAAGGAAGGCATCAGTTCTTTGGAAGAGTCTTTACACGATGAGTCGGGACTGTTAGGAGATGTTAGTAAGCTGAGATGTTGGCAGTATTGCATTGGGAAGGTCTTTGTGACTATATGGTCCGATATTAGAATGGAAACCTGTCTGAACACAGAGAGGGAAGGGGGCCAGTCGACTGGCATCCACAGTGTCCCAGGGAAGACTGGGATTTTGTTGCTTGCTCTGCAGAGGAACACCAGACCCCTGCAGTTTGATTCACGTCCACAGAAGAAACATTAAGACATTTTTCTACATTGGTCCTATTGCAAAGTACAACACACAGAAGCAGACAAATATTCCTAAGTAGCAGTAGACAGTCCAAGGCTGTTCAACCAAACAGAGAGTCATATAAAAAAATTAAATGATTACATATAACAGACCAAACATTCAATGAAGGAATTGAAGGTGAATACAATAAATATGAGAACAAAAACAATTTATGACACATTGGCCGTTAAAAGACCATCTTTGATCATGAATTATACCATCTTGGCCTCTATATACATTGATATAGACATTCAGCTGCGCCCATCTAATGAAAATCTGTCGTTGCATTTAATAATTCTGAATTCTATAAAATAATGTTAGAAAAACTAAGGATCAAAAGTGTAGTTCTTCAGAAAATCATATGCAAAAATAACATCCAAAACTAAATTTACCAAAAAAATGACCTAAAAAAATACACGTTTGCGTAGGTCTATTGAGCTGGTTGTCAACTGTACACACACTGTATTATAAACTCATGCCATTGTACATGTGGATCACCATAATTATGACAATACATCTCACTAATTTTTTGCAAGCAACTGTGTGAATACATGTTATTATGAAAAAACATAAGGGCAGCACTTTCATACCTGCCAATATCCCTTGCTTATAATTCAATTATTGTGAAGAATTACAAAACAAAAACCGTCTTTGAACAGACAGTTGCTTTCACATCATTTTGGCTCAAATGCGTGAAGGTTATTACATTATTGATTTCTGTTGAGGTGTTTGTTTTGTCCAAAAACGATGAGCTCTTGTGAGGGCCCATGCATATGGCTTCTAGTTTCAGAAAGCGGTTTTACACACTGTACATTAACAGATGAATCTCATGAAACAACGTTCAGGTCATGTTTCACACCGAAATCAAAAGAAAGAAATAAGAAATACTTCCCTGGGAGAAAAATAGGACCATTACTACTTTTTTTGCATTAGTATCATAAAAATTAAGCACTTTTCTCCATTATATTCTCATTATTTTAATGCAAAAAAAAGGCTTAATTTTCTTTATGCAAAACATTTGATTTGTTTCTTCTGATTTTGTGGTGAAATGTGACCTGGATATGTTTTTGCGAGATTCACCCTAACAAGACATTCCTGTAAATTCACAACTGAACATTTTTATTTCTTATTTTCACATCAACAGGACAGAATAAACACAGGAACGTGACAAATACATGTTGACTGGACAATAAAAAGTAAATAAATGCAAATCAAGTCAAACTGACACCACAAGCATGAGTCTATCACTCACGTTACACACAACTCTTAATTCAAAAGTATTTTGAAAAACTCTATATTAATATATTCTTAAATGTCTTACACCCTTTCAGGGAAATTTCATAAAATGTGCATTCAGTGCATTATATCCTTCCTCTACATTTTATTATCAAAATGACAAATGCCACACATACACAATATAATTATGCTCTATCTTTAAAACATGCTTCTATGTACATCAATTTATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU569857 lncRNA downstream 4077 17033136 ~ 17039646 (-) True G496833
TU569853 lncRNA downstream 50404 16993086 ~ 16993319 (-) True G496829
TU569812 lncRNA downstream 57189 16968356 ~ 16986534 (-) False G496801
TU569815 lncRNA downstream 69933 16968356 ~ 16973790 (-) True G496801
TU569848 lncRNA downstream 72555 16970817 ~ 16971168 (-) False G496827
TU569879 lncRNA upstream 152645 17198333 ~ 17199818 (-) True G496854
TU569888 lncRNA upstream 212996 17258684 ~ 17259144 (-) True G496863
TU569960 lncRNA upstream 424506 17470194 ~ 17470651 (-) True G496925
TU569969 lncRNA upstream 425869 17471557 ~ 17471761 (-) True G496930
TU569971 lncRNA upstream 443949 17489637 ~ 17489846 (-) True G496932
CI01000340_16864476_16870042.mRNA mRNA downstream 173681 16864476 ~ 16870042 (-) True CI01000340_16864476_16870042
CI01000340_16851655_16855749.mRNA mRNA downstream 187974 16851411 ~ 16855749 (-) True CI01000340_16851655_16855749
CI01000340_16835641_16841074.mRNA mRNA downstream 202649 16835250 ~ 16841074 (-) True CI01000340_16835641_16841074
CI01000340_16689196_16692384.mRNA mRNA downstream 350388 16689169 ~ 16693335 (-) True CI01000340_16689196_16692384
CI01000340_16672630_16676596.mRNA mRNA downstream 367101 16672555 ~ 16676622 (-) True CI01000340_16672630_16676596
CI01000340_17053954_17065047.mRNA mRNA upstream 6689 17052377 ~ 17065047 (-) True CI01000340_17053954_17065047
CI01000340_17078619_17088012.mRNA mRNA upstream 32931 17078619 ~ 17088012 (-) True CI01000340_17078619_17088012
CI01000340_17094196_17104831.mRNA mRNA upstream 48028 17093716 ~ 17106787 (-) True CI01000340_17094196_17104831
CI01000340_17122774_17130168.mRNA mRNA upstream 76708 17122396 ~ 17130168 (-) True CI01000340_17122774_17130168
CI01000340_17146962_17186247.mRNA mRNA upstream 100757 17146445 ~ 17186492 (-) True CI01000340_17146962_17186247
TU569607 other downstream 523749 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 863638 16179988 ~ 16180085 (-) True G495611
TU568273 other downstream 1431160 15606741 ~ 15612563 (-) True G495475
TU567578 other downstream 2484700 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 2488555 14548727 ~ 14555168 (-) True G494879
TU569877 other upstream 131804 17177492 ~ 17242739 (-) True G496853
TU570236 other upstream 1373630 18442995 ~ 18454680 (-) True G497176
TU570552 other upstream 2113181 19158869 ~ 19164472 (-) False G497442

Expression Profile