RNA id: CI01000344_03173512_03177748.mRNA


Basic Information

Item Value
RNA id CI01000344_03173512_03177748.mRNA
length 487
RNA type mRNA
GC content 0.47
exon number 5
gene id CI01000344_03173512_03177748
representative False

Chromosome Information

Item Value
chromosome id CI01000344
NCBI id null
chromosome length 3248351
location 3173403 ~ 3177780 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGATACCAGGGTATGGCGGATTGTTTTTTCGCTTAAAATATGCTTCAAATATCCATCGTCATCTGCTGTTTCTGAAGATCAAATATACGATTTTTAGAGTTATCAAGATGGTGCAGCGCCTGACGTACCGCCGTAGGCTTTCCTACAACACTGCTTCAAACAAGACCAGACTGTCCCGTACTCCAGGTAACCGCATCGTCTACCTGTATACCAAGAAGACTGGCAAAGCACCCAAGTCAGCATGTGGAATCTGCCCCGGTAGACTACGTGGTATCCGTGCTGTGAGGCCCCAGGTTTTAATGAGACTGTCAAAAACCAAGAAGCACGTCAGCCGAGCTTATGGTGGTTCCATGTGTGCCAAGTGTGTACGTGACAGGATCAAGCGAGCTTTCCTCATTGAGGAGCAGAAGATCGTCGTCAAAGTACTAAAGGCACAGGCACAGAGCCAGAAGTCTAAGTAGATGTTGATTTGTACCCTTAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574253 lncRNA downstream 30230 3118091 ~ 3143256 (-) True G500613
TU574125 lncRNA downstream 238497 2889144 ~ 2934989 (-) True G500493
TU574106 lncRNA downstream 507240 2610171 ~ 2666246 (-) True G500474
TU574107 lncRNA downstream 545187 2626147 ~ 2628299 (-) True G500475
TU574117 lncRNA downstream 558603 2608896 ~ 2614883 (-) True G500485
TU574274 lncRNA upstream 4949 3182697 ~ 3183134 (-) True G500633
TU574275 lncRNA upstream 5723 3183471 ~ 3183702 (-) True G500634
TU574276 lncRNA upstream 6952 3184700 ~ 3186198 (-) True G500635
TU574279 lncRNA upstream 19078 3196826 ~ 3197232 (-) True G500638
TU574282 lncRNA upstream 20161 3197909 ~ 3198204 (-) True G500639
CI01000344_03152876_03154695.mRNA mRNA downstream 17799 3152146 ~ 3155687 (-) False CI01000344_03152876_03154695
CI01000344_03025864_03058509.mRNA mRNA downstream 114970 3024757 ~ 3058516 (-) True CI01000344_03025864_03058509
CI01000344_02756871_02861561.mRNA mRNA downstream 311925 2756871 ~ 2861561 (-) True CI01000344_02756871_02861561
CI01000344_02729258_02730435.mRNA mRNA downstream 442275 2728570 ~ 2731211 (-) True CI01000344_02729258_02730435
CI01000344_02720070_02724425.mRNA mRNA downstream 449061 2719853 ~ 2724425 (-) True CI01000344_02720070_02724425
CI01000344_03210719_03211618.mRNA mRNA upstream 32894 3210642 ~ 3211618 (-) True CI01000344_03210719_03211618
CI01000344_03211733_03215881.mRNA mRNA upstream 33887 3211635 ~ 3216004 (-) True CI01000344_03211733_03215881
TU574100 other downstream 18275 3152098 ~ 3155211 (-) True CI01000344_03152876_03154695
TU574122 other downstream 427965 2738338 ~ 2745521 (-) True G500490
TU573592 other downstream 1053009 2118371 ~ 2120477 (-) True G499994
TU573489 other downstream 1357538 1815542 ~ 1815948 (-) True G499918
TU573330 other downstream 1750312 1422351 ~ 1423174 (-) True G499807

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00017716 True 666 mRNA 0.48 5 CM030131.1 19656933 ~ 19659528 (-)