Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020749 |
| length | 1800 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 10 |
| gene id | XLOC_010588 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 17548695 ~ 17578503 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042981 | regulation of apoptotic process | biological_process |
| GO:0043281 | regulation of cysteine-type endopeptidase activity involved in apoptotic process | biological_process |
| GO:0006915 | apoptotic process | biological_process |
| GO:0006919 | activation of cysteine-type endopeptidase activity involved in apoptotic process | biological_process |
| GO:0043065 | positive regulation of apoptotic process | biological_process |
| GO:0097192 | extrinsic apoptotic signaling pathway in absence of ligand | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0008630 | intrinsic apoptotic signaling pathway in response to DNA damage | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004197 | cysteine-type endopeptidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008234 | cysteine-type peptidase activity | molecular_function |
| GO:0097153 | cysteine-type endopeptidase activity involved in apoptotic process | molecular_function |
| GO:0097199 | cysteine-type endopeptidase activity involved in apoptotic signaling pathway | molecular_function |
| GO:0097200 | cysteine-type endopeptidase activity involved in execution phase of apoptosis | molecular_function |
| id | description |
|---|---|
| ko04210 | Apoptosis |
| ko01009 | Protein phosphatases and associated proteins |
| ko01002 | Peptidases and inhibitors |
| id | description |
|---|---|
| ZDB-GENE-030825-3 | Predicted to enable cysteine-type endopeptidase activity involved in apoptotic signaling pathway and cysteine-type endopeptidase activity involved in execution phase of apoptosis. Acts upstream of or within intrinsic apoptotic signaling pathway in response to DNA damage; positive regulation of apoptotic process; and regulation of cysteine-type endopeptidase activity involved in apoptotic process. Predicted to be active in cytoplasm. Is expressed in digestive system; nervous system; and pharyngeal arch. Orthologous to human CASP2 (caspase 2). |
| ensembl_id | ENSDART00000128388 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00020736 | lncRNA | downstream | 314326 | 17235282 ~ 17240838 (-) | True | XLOC_010581 |
| TCONS_00020732 | lncRNA | downstream | 357563 | 17194073 ~ 17197601 (-) | False | XLOC_010579 |
| TCONS_00022136 | lncRNA | downstream | 522353 | 17015188 ~ 17032811 (-) | True | XLOC_010573 |
| TCONS_00020715 | lncRNA | downstream | 888407 | 16665854 ~ 16666757 (-) | False | XLOC_010571 |
| TCONS_00020707 | lncRNA | downstream | 951084 | 16593349 ~ 16604080 (-) | True | XLOC_010568 |
| TCONS_00021793 | lncRNA | upstream | 100756 | 17679103 ~ 17681952 (-) | True | XLOC_010591 |
| TCONS_00022137 | lncRNA | upstream | 126483 | 17704830 ~ 17706576 (-) | False | XLOC_010592 |
| TCONS_00020756 | lncRNA | upstream | 126483 | 17704830 ~ 17706764 (-) | False | XLOC_010592 |
| TCONS_00022138 | lncRNA | upstream | 245100 | 17823447 ~ 17824848 (-) | True | XLOC_010594 |
| TCONS_00022139 | lncRNA | upstream | 559295 | 18137642 ~ 18140068 (-) | True | XLOC_010595 |
| TCONS_00020744 | mRNA | downstream | 13274 | 17477152 ~ 17541890 (-) | False | XLOC_010587 |
| TCONS_00020745 | mRNA | downstream | 29842 | 17478073 ~ 17525322 (-) | True | XLOC_010587 |
| TCONS_00020743 | mRNA | downstream | 207437 | 17302452 ~ 17347727 (-) | True | XLOC_010586 |
| TCONS_00020742 | mRNA | downstream | 209787 | 17302452 ~ 17345377 (-) | False | XLOC_010586 |
| TCONS_00020741 | mRNA | downstream | 238724 | 17302452 ~ 17316440 (-) | False | XLOC_010586 |
| TCONS_00020751 | mRNA | upstream | 260 | 17578607 ~ 17586070 (-) | False | XLOC_010589 |
| TCONS_00020752 | mRNA | upstream | 1568 | 17579915 ~ 17586883 (-) | False | XLOC_010589 |
| TCONS_00020753 | mRNA | upstream | 2525 | 17580872 ~ 17586068 (-) | True | XLOC_010589 |
| TCONS_00020754 | mRNA | upstream | 61549 | 17639896 ~ 17660594 (-) | True | XLOC_010590 |
| TCONS_00020755 | mRNA | upstream | 92954 | 17671301 ~ 17699111 (-) | False | XLOC_010591 |
| TCONS_00020738 | other | downstream | 307801 | 17247222 ~ 17247363 (-) | True | XLOC_010583 |
| TCONS_00020737 | other | downstream | 310117 | 17244908 ~ 17245047 (-) | True | XLOC_010582 |
| TCONS_00020724 | other | downstream | 425698 | 17121998 ~ 17129466 (-) | False | XLOC_010577 |
| TCONS_00020722 | other | downstream | 434978 | 17120064 ~ 17120186 (-) | True | XLOC_010576 |
| TCONS_00020716 | other | downstream | 862897 | 16677708 ~ 16692267 (-) | True | XLOC_010571 |
| TCONS_00020757 | other | upstream | 127551 | 17705898 ~ 17705987 (-) | True | XLOC_010592 |
| TCONS_00020761 | other | upstream | 790567 | 18368914 ~ 18372540 (-) | True | XLOC_010597 |
| TCONS_00020762 | other | upstream | 917193 | 18495540 ~ 18501141 (-) | False | XLOC_010598 |
| TCONS_00020763 | other | upstream | 918948 | 18497295 ~ 18501141 (-) | False | XLOC_010598 |
| TCONS_00020764 | other | upstream | 919207 | 18497554 ~ 18501117 (-) | True | XLOC_010598 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000016_09107780_09122244.mRNA | True | 1533 | mRNA | 0.48 | 9 | CI01000016 | 9107409 ~ 9122290 (-) |
