XLOC_010573 (plekhg6)


Basic Information

Item Value
gene id XLOC_010573
gene name plekhg6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17007089 ~ 17056630 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020718
CGCTTGCTCAACCTGTTACTGGAGGAAGGTTACAGTGGAACCAATTTGAGAGAAACACACAAAGGACTCAGTCAGGAAGGCAAGAGGGAATGAAAGAGACCATAAAGATGTTTGTCTGAGGGAAATGGACACTGTTAAATCCAGTAATCCATCAAATCCACAAGAAGTGAACAATGTCATGGCCCCGGAGGAAACTGCCCTCGGTGAGAAGAGTGACAGACAGCGGCAGGAAAACAATGAACCAGACGTAGACGCTCCTGATGGATTTGTTGCAGTAGCATCAACTGGTCAGCGGAGGGCTCAAGAAAAACACAGATACAACACTATAGGCTACCAGAAAAAGAAACAGAGGACAAATGTGGACTTTTCTACTGTGAGCAAAGGAGCCGGTGTGAAATCCAGAGGTGCATTAAAGCAGGTGCTTTTCAACCAGGGAACAAATGACAAAAACGGCACTGTGGAgGAACGATTGGGTGGAGTACAGGGGCAGGTGGATGTACTTAAACAGCTTCTGGACTCTTTCAGTGTACCTGCTGACCTAAGGTGGACATGGGGGGAGGGAGGAACTGAAAGAGCACTAGAAAAGAGCTGGACAGAAATAGTGCACTCTCATGAGTCTATGTCCAAAACCCAGCGACTCCAGCAGGAGGCACTGTGGGAGCTTCTTAACACTGAGCTCACTTACATCAACAAACTCACTATTGCCAAAGACCTCGTACTGGCTGCACTTTCATACTGTCATTTAAACGGATTTCTTCAAGAAgtTAGCCCCACGATGCTCTTTTCCGATCTTCCATCTATTCTCGATGCACATCGGCTCTTTTGGCATGATGTGATGTATCCAATGTTACAAGAAGTCCGTCTCACTGGACGACCTTTTGACCCTATGAAACTTGAACCAGGGTGTTTGCAGTTTCACAAACGTTTTCCTGCATATTTTGATTACTGTTTCGAAGGGGACAGAAATGTGGAGCTAACACGAAAACAGCTTGAGACGAACCCACAATTTTACACCTATCTCATGTGGGTGGAGAATCATCCACAGTGTGGGCGAATGAGACTGGGCGACATGCAGGCTAAACCACATCAGAGAATCACCAAGTACCCTCTTTTGCTCAAAGCTGTTCAGAAGACCACAGAAGACCTCCCTGCCAAAATCGCACTTGACAGAATGTTGAACAGTGTCAATAATTTTGTGCAGTCTATCAATGACTATTTGCAACTGAAAGCAGATGAGCTGGCCCTTTCTGCCATTGCTCAAAGGATAGAGGGATACAAGATAGAGGGTCTAAGTGAAGAAGTAGACAAGCATGTTCGCGAGATCTGCCGTTTTGATTTGACGAGCCCCATGAGTGGGGTGGGGCCAAATGTAATACGCAAGCAAATACTGGAAGAAACTTTGAAGGTTAAAAGAAGAAAGGATACAAAGGAGTTTGTGGTCCTGCTCTTTACTGATGTGCTGTTGATAACTAAAGCACAGAAGAAATCAGACAAGCTGAAGGTACTGCGCCCCCCAATGCTTGTGGAGAGAATACACTGCATTGAGGTCAAAGATGGCTATTCATTTATGCTGGTGGAGGTCGGTGATCTAGGCTGCCCTCTAAGTGTGCATATCATGTCCACACCCAGTCCAGACAGCTGTGCGTCATGGGTGTCTGCTCTGCGTGAGACTCAGGAGGCATTACAGAAATTGAAGATAAACGAGAAGAACgcaatattaaaaaatacacataccGTTCCAGATAAGGATGCTGATTTTCACACAGCATATTATAGTGATATTGACCCAGAAGAAATGGTACAACAGATTTACCCCACATCCCAATCTGACAGCGATTCTGATCCAGCTGATAATGAGAGATCTACGTTCAGCAAGGTCGATACACTGATGGATGTGGAGCAAAGTGAAGTTCAACAGATGTCAGATTACAGGAGCTCTTCACTGACTGAACCCGATGATCAGAGCCAGTCAGGTTATGAAGAGGTTGTGGGAAAGACTGATTCAGTTGGATTGAACGCAGAACAAGGAAAAAGCAGAATTAACAGCAATCAGTGGGAAGATGAAGAGGCCTCATTAAAAAATATCCAAGAAAGGCGAGTTACAtggacacaaaaacaacagacacCTTCAAACTCAAATGACCTTACACAACAGGAATTACCAATAAGAAACAATTTGAATGGACCTGCTGGACATGTAAAAGACACAATCCAACCTCTCATAATTACATCCGCACATGGGACAAGTGTAGAAACAGGTGAACCAATGCATCTAGATCCAGATAGTGACTCTCAAGAAAGCAGGAGAAACTCTTTGTGCAGCCAGCAAGAAGATGATGAAGAGTCCCTCACAGAATCAAAGAGGTTCTCCAGGAAACTGAAGTCTCCTCGCATACAGAGGAGacgtctgaataatgcgcagccAAACGGAATGGGATTTGCTTCCGATGCAAACTCCAGCAGAAGCCAGAAAAACAAATCTCAGGATTCCCACAGAGTGCTAAAGCTGGGATCTCTGAAAAACAACCCTAGTACATTATGGTATGTTCCTGAGAAGAGATCACAGAAGAGATCCCCGACTCAAGAGATGCACTCTGAACCTGAGCAGACACCGGAAGAAAAGCGTAAATTGAAACTAATCAAACTCAAGACCCAGAGGAGCGCTTCTATCCCAGAAATCAGCATACCTCAGACTTCCATCCCACCTTCCCAAATTACTAGCTCCTCACTGTTAACTGCCCCGGACCCCCAGCCTCCAACATCTCCACTTCAGAGTGTGCTGCAGAGGGCAAAAGAAAGGGAAAAGGAACGCGGGCTGGGAAGAAAAGTTGTAAAGGAAAAAGAGAAGACTTTTTCCATACAAAATTCTCCTACTATTTCTGCCTCTTCATCGCTGTCGGCCagtgaaggagagagagagacagaaagagaggaaTCAGCAGAACCCAGTGTAATGTTTGCACATGGATGGAGAGAAGGAAATGTTGATGGAAGTGAGGATGAGATGAAAGAAAGTAACGTTCTGGAGGGTATCAGTGTGGACTGGCCAGGCTGGTGTTTTGACGATGAGGAGTTTTTTGACTTTGAGGACTTAGATTATGAAAACTGGTTTGAACAGTCACTCACCTCCAATGGAGTCCGCAGGTCAAAGACAAAACGATCGGAGGGCCATGATGATAACGAATGGAGTGAGGTGTAATTATGTTGAACTACTGTACTTACACAAATGAATCATGGTTTTTCTACAAATACCCTCTAATCCCCTTTTacacatgtatttatatatacatttgggGTTATGGTAATCAAAAAAATTCAACCGTTTGAAAAATGTTGTGTTCTTTAAAGGTTTAATAGCATTGTGTGAGAAGTGTGTAaagaatgttatatatatttttatgatcaTGTAGCATGACTATTATACTTAAATGTATTTGAGAGACATCCATAGCTTGTAAATTGTTTTTATAGATATATAATGAAAGATTGATTAACATTGTGTCTCTAAAAGTCAGACTTGTATAAAGAACAATTATTTTTCTGTATAGGTGTATATCCATTTAAGAGACTTGTTTATAACGTATTTACTGTACACAAGAAGCAGTAAGAAgtaattgcaattaaaaaaggCATGTTCActtta
>TCONS_00022136
AAGAAACTTTGAAGGTTAAAAGAAGAAAGGATACAAAGGCAATTTGTGGTCCTGCTCTTTACTGATGTGCTGTTGATAACTAAAGCACAGAAGAAATCAGACAAGCTGAAGGTACTGCGCCCCCCAATGCTTGTGGAGAGAATACACTGCATTGAGGTCAAAGATGGCTATTCATTTATGCTGGTGGAGGTCGGTGATCTAGGCTGCCCTCTAAGTGTGCATATCATGTCCACACCCAGTCCAGACAGCTGTGCGTCATGGGTGTCTGCTCTGCGTGAGACTCAGGAGGCATTACAGAAATTGAAGATAAACGAGAAGAACgcaatattaaaaaatacacataccGTTCCAGATAAGGATGCTGATTTTCACACAGCATATTATAGTGATATTGACCCAGAAGAAATGGTACAACAGATTTACCCCACATCCCAATCTGACAGCGATTCTGATCCAGCTGATAATGAGAGATCTACGTTCAGCAAGGTCGATACACTGATGGATGTGGAGCAAAGTGAAGTTCAACAGATGTCAGATTACAGGAGCTCTTCACTGACTGAACCCGATGATCAGAGCCAGTCAGGTTATGAAGAGGTTGTGGGAAAGACTGATTC

Function

symbol description
plekhg6 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in Rho protein signal transduction and endothelial cell migration. Predicted to be active in axon; endocytic vesicle; and plasma membrane. Orthologous to human PLEKHG6 (pleckstrin homology and RhoGEF domain containing G6).

GO:

id name namespace
GO:0007266 Rho protein signal transduction biological_process
GO:0043542 endothelial cell migration biological_process
GO:0030139 endocytic vesicle cellular_component
GO:0030424 axon cellular_component
GO:0005886 plasma membrane cellular_component
GO:0098793 presynapse cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-2517 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in Rho protein signal transduction and endothelial cell migration. Predicted to be active in axon; endocytic vesicle; and plasma membrane. Orthologous to human PLEKHG6 (pleckstrin homology and RhoGEF domain containing G6).

Ensembl:

ensembl_id ENSDARG00000086056

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020718 False 3643 mRNA 0.43 15 17007089 17056630
TCONS_00022136 True 614 lncRNA 0.44 4 17015188 17032811

Neighbor

gene id symbol gene type direction distance location
XLOC_010572 uts2r3 coding downstream 245925 16757219 ~ 16761164 (-)
XLOC_010571 c4b coding downstream 305371 16665203 ~ 16701718 (-)
XLOC_010570 tnxba coding downstream 357325 16621242 ~ 16649764 (-)
XLOC_010569 cyp21a2 coding downstream 387192 16605517 ~ 16619897 (-)
XLOC_010568 NA coding downstream 403009 16593349 ~ 16604080 (-)
XLOC_010574 tnfrsf1a coding upstream 4128 17060758 ~ 17072561 (-)
XLOC_010575 si:dkey-260g12.1 coding upstream 45473 17102103 ~ 17116499 (-)
XLOC_010576 CU861451.1 coding upstream 63434 17120064 ~ 17120186 (-)
XLOC_010577 iffo1b coding upstream 65356 17121986 ~ 17162843 (-)
XLOC_010578 opn9 coding upstream 106563 17163193 ~ 17188294 (-)
XLOC_010626 CR392024.2 misc upstream 3838482 20895112 ~ 20895175 (-)
XLOC_010567 CR848667.3 non-coding downstream 433559 16573414 ~ 16573530 (-)
XLOC_010565 CR848667.2 non-coding downstream 477117 16526975 ~ 16529972 (-)
XLOC_010562 NA non-coding downstream 736654 16266556 ~ 16270435 (-)
XLOC_010554 CT573799.2 non-coding downstream 1192588 15813506 ~ 15814501 (-)
XLOC_010582 CR936322.1 non-coding upstream 188278 17244908 ~ 17245047 (-)
XLOC_010583 CR936322.2 non-coding upstream 190592 17247222 ~ 17247363 (-)
XLOC_010592 NA non-coding upstream 648200 17704830 ~ 17706764 (-)
XLOC_010594 NA non-coding upstream 766817 17823447 ~ 17824848 (-)

Expression


Co-expression Network