XLOC_010570 (tnxba)


Basic Information

Item Value
gene id XLOC_010570
gene name tnxba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16621242 ~ 16649764 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020712
ATGTTCACCATCGCTCCTTCTCCATTAATCTCAGTCAGTTACAGGAGGTTCTCAATGCTGATGGAAGGAACTTTTTTTCAACACAGAACAGGATAGCAGCTCCAAACACAGgaaaCAAATCCATTATATCCCAAAGACAAGTCGAATAGCTGGGGAAAATAACTTAATTTAGGCTTTATATTATTAGTATAGATCATTAATTTGTATGAATAAACTGGGCACATCAACCCAGTATAAAATGTTAATCTCATTAGTTTTTCTCATTCTAAATGTGTCTTTTCTTCAAGGCACACTTAGCGAGAATAAAAATGACACTATCAAAACCATAGACCATACCTTTAGTCATCATATTCCCGTACAAGTAACTACACCATTAAgcacaaaagtaaaaaaacaaactcatGCTGCTTCTTCAAAAATGAGCAACAGCAATCAGACTCTTCCATTCACTCCGAAGCCTGTTGTAGATGATATCCAGAAATCTGTCCCTCTTTTTCAAGACACACTTAGTGCCAAGGACAATTCTACTTCGGAATCAAGATTGAATGCACATAATGTGCATAAACCCTTAACCAGATTATCAAACACCAAAATCAGAAACCAAACTCAATCTACTTCATCAATAAGTAGCAGCATCAGTCAGACTCTCCCATCCTCTACAGAGCCTGCTGTAGATGGTGTTCAGAAACCTGTGCTTGCTTTAAGAGGCAAACTTAATGAGAAAAAACATTCTACTGTGCAGTCAACAGCACACCTAGGTAGTCTTGACATTCCAAAGCTGGTGACAACAAAGctaattaacaaaatgaaaaacCAGACTCGTCCTACTTTGGCAAAACCGAGCAGTGTTAACCAGACTCTTCCATCAGTTAAAAAGATTGTTGCAGATCAAAGTACAATTACTGAGAAAAAAAATTCCACTGCAAATTTACCTACCCAAATTATTTCTGTGCCAAAGACTGACAAGAAAACCAAAAACCATACTCAGTCCACTTTCTCAATAACTAGCAACATCAATCAACATCAAGACATTGTTGAGAAGCATCCACCTTCTTTGCAGGACCCACATAGTCAAAAGAAAAACTCTACGATGAAGTCTCCAACCCAAACTATTAAAGTTGTGACTACTTcattaaatagcaaaaaaaaggACCAAACTCAATCTACTTCCTTGACATATAGCAAACCTGCTGTAGATGTTGTGCAAAAATCTGTGTCTCCTTCTCCAACTACATTTGGTGAGAAGAGAAACACTACTACCAAGTTAGTGAGCCACAATATTAATGTTAATGCTTCAAAGCCTGAAAACACTAAGGTTCAAACTCAGTCAGTTTCTTCAAAACCTACTCACATTAATCAGACTCTCTTATCCACACCAAAGCCTGCTGTAGATGTTAAGACACCTGGGTCTGCTCTACAAGACATATCTGGTACAAAGAAAAATTCCACATCCAAGTTAACAGCTCAAACTATTAGGAATAATGTTCCAACACTAACtacattgttaaatattaaactgAAAAACCAGACTCATCCTTCTTTTTCAACGATAAGCCATGTCAATCAGACTGTCCCATTCAGCACAAAATTTGTGGATGAAGTCACACATAGAATGAAGAAAAATTCTACTGTCAAGGCAAGGTTACAAACAATTAATATCAATGCATCAAAGCCAGTAACTACATCATTACACACTAAAACGAAAAACCAAACTCAATCAACATCATTAAAAATAAGCAAAGCCAATCAGACATCCCCATCTACCACTAAGCCTGTTGAGGGTGAAATCAGCCTTGGCAAGAAAAAAAATTTTACTGTCAAGTCAGCTTCTCAATCTATTGATGTTCATGCATCAAAGCCAATAACTACACCACCAAACACCAAAACGAAAAACCAAACTAAGCCTAGTTCatcaaaaaataacaacaatgatcAAGCTGTCACATCCACAAGCCCTGTGATGGATGGCACACAAAATCTAGATATAGACAAACTTGCAGAGAGTTCACCAATTAAAATAGTTATAACCGAGGGTTGTGTTCAGCGGAAGTCTCAGGGAGATGTAGGTAACATAACTAAAATACGAGAAACAGAACTAAGTTTGAATCCTGGATCTCCTCTGGTTATGACTCATCGAATCAACCTGGTACAAGGAACATGCAATGGAGGTTGTGAGACGGACATGGCTGCACTGAGGGAAAGAATTGAGCTTCTTGAAAAGGAGATGTCAGCTATTAAACAAATGTGTGTTCCGTGCTCAGGAGAGCAGTGCCCTAAAAACTGTAGTGGCCAGGGCAAGTGTGAAGAAGGAAAGTGTGTTTGTTTCCAGGGCTTCAGTGGTCCAGACTGCAGTAGTAAAGCATGCCCCTCTAACTGCAACAAAAAAGGGAAGTGTGTGAAGGGAAAGTGTGTGTGCCAGACTGGTTTTACAGGCATAGGCTGCAGTAAAGCTATAGACGAGAGGATCACAGTAACTGTTGAAACTGTGACTATGAAGATGTCCAGTGCCATGCCAGACACAAAAACTGTCAAGACAAGGCCAGACAAGGCAATTTTAGTGAAAGAGACAGTTACAAAGGTCCCAAAGAAACACACTACAGCCAAGCCAACAGTAAAGCCAAGTCCCACCGCCTCCACAGATAAAGTCCTGTCCCATACCACAGGGAAAGACAACATTAAGATTGTTGGGCAACAATCTGAAAGCATGAAACTTCAAGAACAAACAAAGGGTAAAACAACAGTCATAAAGATGGGTTCAGACAATCAAGCACAAACTGATTTAAGTGACAAGAGCCATAATGCTAAAGATGAGCCTGCCTATCAGAATGTGACTCAAAGATCTGTAAAGAAGAGTAATGGAACTTCCAAAATTCTGCATAATTTGTTTAAAGGGTCAATGAATGTAACTCGGTCCAAGACAAAGATTACTACAAGAACTGCAGGAGATCAAGGGGAAGAAAGCAAGACCAATGCTGTCTCTGCTGAAAAAGACGAGAAGTTGTTTCATGGCAATGTAACAACAGTTCAAGCTGAGAAGAAGTCTGATAAGCCTGAAATTGATGCAAGTGTTGAATCCAAAGCTCATATGAAGCATTTCAGTAAAACTAGCAGCAGATTATCTGTCATTGGGTCAGTTGAGGTTCATAACATCACTTCTACTGGCTTCATTATGTCTTGGGAAGCACATCGAGACAAGTTCAAGAACTTCACTGTCACAAGAAGGGAAATCAAAGCAGGAAATGAAGATTCTGAGAAAATTCATGAAGCAATAGAAAATGTAACAGATGCTGAAAGGCTGGGATCAAACAGAACCTTGACTAAAATACTCAGTAGCAAATCTGAAGGAAACGCTATGAAAAAGTTTTCACAAATTCTAGCTGGTACAACTCGATCATATCATTTTAAAGGCCTTCAACCTCAAACTCAATATGCGATTTCCTTGTTTGGCTCTGGTCCTGGCATGCGATCCAAGATTCACCGCATTACATTATCCACAGgCCCTGAGCCGCCCACTGACCTGGTGTTCAGCAACATAACAGAGACATCCTTTTCACTGTCCTGGGCAAAACCTAAAAGCATAGTGGCAGAATTTAAAGTCAAATACATCAACACTGTGACTGGCGAGAGTGGCTCCATGTCTGTTGACTCCCAGCTGTCCCATGTTCTCCTGTCTAAGCTCACTGCTGGCACCACTTATGACATTACTGTGAGCTCAGTCCTGGATAAACTCGAGAGTGAGCCAGTCATAGCTTCTATCACCACAGTGCCAGATTCTCCTACTGAACTAAAAGTAGTGAACATCACAGACACTAAAGCTTTGCTGGTATGGAAACCGTCCAAAGCAAAGGTGGACAGCTATATCCTAAGTTATGGGACTACAAAGTcTCCTAATGTGACTATTACAGTGACTTTATCTGGCAGTTCTGTGGAGCACCAGCTTAGAGCACTTCATAGATCTTCTTTATACATGGTGAAAATGACAAGTCAAGTCAACAGGCTCCAGAGTAGCTCAGTCTCCACATCTTTCACAACAGGAAGTGGGGTGAAGCTTCAAGTAGTGACCCCTGATGAGGTGACCTTTCACTCAGCTGTGATTTCATGGAAGGCTCCCCGTGTAGCTTTCAAAAGCTACAGGCTCACATACCAGCTTAGCGAGGAAGTCAAGGAGCTGATTTTAAATCCATCTGTGACTCATTATGAGCTGACTGGACTGGCGGCTTTCTCAAACTATACTGTGAAAATAGACGGAGAAAGAGATGGGCAGTACATCAGTTTTGTCTCTTCTGACTTTACAACCGCCCAGCTTCCACACCCATATCCCACAGACTGCTCAGAGGTGCAGATCAATGGGATGAAGGAGTCAGGAGAGGCTGAGATCTACCCTGAAGGGAAGAATGGAGAGCCGGTCAGGGTGTACTGTGACATGGAAACAGATGGAGGTGCCTGGACAGTTTTCCAGAGAAGAATGGATGGATCCACAGATTTCTTTAGGAGCTGGAGAGACTATAGTAAAGGCTTTGGTCTCTTAAGTGGAGAATTCTGGCTGGGAAATGATGTGCTTCACACTCTCACCAGTCTTAAAGCAATGAGCTTGCGGATTGACCTGCGCTCAGGAAATgacacagcctttgctcaatataTAAACTTTAACATTAGCTCAGAGGCTAATCACTATGCAATTGACCTGTCTGGATACTCTGGCACTGCTGGCGATTCCATGAAATATCACAAAGGCCGTCCATTCTCTACCAAAGACAAAGACCCGGACACGCTCAGCATCCACTGCGCTAAAGCCTACATGGGAGGATGGTGGTATAAAAACTGCTACAAGGCGAATCTCAACGGCCTCTACGCCTCTTATTCAGACAACAAGGGTGTGGTGTGGAttgactggaaaggcaaagacGCATCCCTGCCATTTACAGAAATGAAGCTTCGACCTTCCAATTTTAGTCAAACAACCTCAACAACTCCAACAGCCCAAAGTTAAACCTGCAAAGTGAATAATGCACAATGTGCAAATACACTGTACAAATTTCTACACTGCTACTTCATTGTATATAAGTTGACAACATGCATACAATTCTTATATTACTTTGATGTGTAGCTTTGCAAATCACATTCTTTAGTGTACAACACTTTGTTTCTTAGAATTGTTATGTAGACATGCATGTGTCAATGTTCTGGTGTTCAATTATCTACCACAGATCTTACCATTTCTCCTACTGAaataactgcactgttttggtctgttgttgctttttttggaTAATTCATGTTACTTCAAATCTCTTTATATTACTATCACCCCTGTCTATAAATTTGTTTTACTTTCCTTGTTTCAAGATGTGTagagaaaatgaataaaacaatgtacTAACCA
>TCONS_00020713
CTGTGctagccaacacatatcagtgtttaatatgaattaattagattaaaaaccttaccattttgttggagtgcactAAGTGCACTATCCTGTGCTTCTatatggctgtatttacatttctgtcatgttttgtctggtgcaaacagtcaAAATCGCTTGTCACTACAAATCTCATTGCGAAGCGCGTttttaggacacagggttacaatgtaacctgctcacctaatgtttatgttcacaatatttatattatttgctaactaAAACCACCTCATgtagaactctgaatctgcatctcatttcagagtctgccactttgagagcctttctgactgaataaatttaatttgctgttttccaccaaggcaacctgggaTGCTGAAATATACTTGGCTAAACGAGCAGTGGCGGGTTAAAgataccaaaacaaagacagacgttctagCATGGAacgcacatttttaaagcaaaatatgaATGTTCACTTAGCAAGTTTCTTAAATATGGGAAAACatatgatatttttatgctttagaagagtcaaaaacttacatactgcacctttaaaacaaaaattctcTAATGTAAATAGCAACTTACTCCAATTTGATGATTTGCTACAAGACTGTTGTAGTGCTTAGTCTGATAGTTGTGACAACCAGTACTCTGTTCAAACACAATTCTTTCCACAtgctcacataaaaaaaaaaaacatacaaagagCTTGGACATAtgaacagtttgtttgtttgtcaagaTGAAAAAATTATGAGAATTTACTTACTGCACCCTtattggaaatattaaaaaatattattaatcaaGTATGTGTTATGACAATGCATATACATTAGAACTGAATGAACTGGTTATTACACTTTATCTGTCTTCAGGTGTTCCGTGCTCAGGAGAGCAGTGCCCTAAAAACTGTAGTGGCCAGGGCAAGTGTGAAGAAGGAAAGTGTGTTTGTTTCCAGGGCTTCAGTGGTCCAGACTGCAGTAGTAAAGCATGCCCCTCTAACTGCAACAAAAAAGGGAAGTGTGTGAAGGGAAAGTGTGTGTGCCAGACTGGTTTTACAGGCATAGGCTGCAGTAAAGCTATAGACGAGAGGATCACAGTAACTGTTGAAACTGTGACTATGAAGATGTCCAGTGCCATGCCAGACACAAAAACTGTCAAGACAAGGCCAGACAAGGCAATTTTAGTGAAAGAGACAGTTACAAAGGTCCCAAAGAAACACACTACAGCCAAGCCAACAGTAAAGCCAAGTCCCACCGCCTCCACAGATAAAGTCCTGTCCCATACCACAGGGAAAGACAACATTAAGATTGTTGGGCAACAATCTGAAAGCATGAAACTTCAAGAACAAACAAAGGGTAAAACAACAGTCATAAAGATGGGTTCAGACAATCAAGCACAAACTGATTTAAGTGACAAGAGCCATAATGCTAAAGATGAGCCTGCCTATCAGAATGTGACTCAAAGATCTGTAAAGAAGAGTAATGGAACTTCCAAAATTCTGCATAATTTGTTTAAAGGGTCAATGAATGTAACTCGGTCCAAGACAAAGATTACTACAAGAACTGCAGGAGATCAAGGGGAAGAAAGCAAGACCAATGCTGTCTCTGCTGAAAAAGACGAGAAGTTGTTTCATGGCAATGTAACAACAGTTCAAGCTGAGAAGAAGTCTGATAAGCCTGAAATTGATGCAAGTGTTGAATCCAAAGCTCATATGAAGCATTTCAGTAAAACTAGCAGCAGATTATCTGTCATTGGGTCAGTTGAGGTTCATAACATCACTTCTACTGGCTTCATTATGTCTTGGGAAGCACATCGAGACAAGTTCAAGAACTTCACTGTCACAAGAAGGGAAATCAAAGCAGGAAATGAAGATTCTGAGAAAATTCATGAAGCAATAGAAAATGTAACAGATGCTGAAAGGCTGGGATCAAACAGAACCTTGACTAAAATACTCAGTAGCAAATCTGAAGGAAACGCTATGAAAAAGTTTTCACAAATTCTAGCTGGTACAACTCGATCATATCATTTTAAAGGCCTTCAACCTCAAACTCAATATGCGATTTCCTTGTTTGGCTCTGGTCCTGGCATGCGATCCAAGATTCACCGCATTACATTATCCACAGgCCCTGAGCCGCCCACTGACCTGGTGTTCAGCAACATAACAGAGACATCCTTTTCACTGTCCTGGGCAAAACCTAAAAGCATAGTGGCAGAATTTAAAGTCAAATACATCAACACTGTGACTGGCGAGAGTGGCTCCATGTCTGTTGACTCCCAGCTGTCCCATGTTCTCCTGTCTAAGCTCACTGCTGGCACCACTTATGACATTACTGTGAGCTCAGTCCTGGATAAACTCGAGAGTGAGCCAGTCATAGCTTCTATCACCACAGTGCCAGATTCTCCTACTGAACTAAAAGTAGTGAACATCACAGACACTAAAGCTTTGCTGGTATGGAAACCGTCCAAAGCAAAGGTGGACAGCTATATCCTAAGTTATGGGACTACAAAGTGTAAGTGAAGTTGAATATTTTCTTAAATTCTCAACTGAACTGTCCAACTGAactgctcattctgaaaacgtagccctatatac

Function

symbol description
tnxba Predicted to enable signaling receptor binding activity. Predicted to be involved in negative regulation of T cell activation and regulation of immune response. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome; Ehlers-Danlos syndrome classic-like 1; and vesicoureteral reflux. Orthologous to human TNXB (tenascin XB).

GO:

id name namespace
GO:0050868 negative regulation of T cell activation biological_process
GO:0050776 regulation of immune response biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070103-5 Predicted to enable signaling receptor binding activity. Predicted to be involved in negative regulation of T cell activation and regulation of immune response. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome; Ehlers-Danlos syndrome classic-like 1; and vesicoureteral reflux. Orthologous to human TNXB (tenascin XB).

Ensembl:

ensembl_id ENSDARG00000001760

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020712 False 5383 mRNA 0.40 16 16621242 16649764
TCONS_00020713 True 2614 mRNA 0.39 5 16631572 16643377

Neighbor

gene id symbol gene type direction distance location
XLOC_010569 cyp21a2 coding downstream 1345 16605517 ~ 16619897 (-)
XLOC_010568 NA coding downstream 17162 16593349 ~ 16604080 (-)
XLOC_010566 si:ch211-257p13.3 coding downstream 30462 16554687 ~ 16590780 (-)
XLOC_010567 CR848667.3 coding downstream 47712 16573414 ~ 16573530 (-)
XLOC_010565 CR848667.2 coding downstream 91270 16526975 ~ 16529972 (-)
XLOC_010571 c4b coding upstream 15439 16665203 ~ 16701718 (-)
XLOC_010572 uts2r3 coding upstream 107455 16757219 ~ 16761164 (-)
XLOC_010573 plekhg6 coding upstream 357325 17007089 ~ 17056630 (-)
XLOC_010574 tnfrsf1a coding upstream 410994 17060758 ~ 17072561 (-)
XLOC_010575 si:dkey-260g12.1 coding upstream 452339 17102103 ~ 17116499 (-)
XLOC_010626 CR392024.2 misc upstream 4245348 20895112 ~ 20895175 (-)
XLOC_010562 NA non-coding downstream 350807 16266556 ~ 16270435 (-)
XLOC_010554 CT573799.2 non-coding downstream 806741 15813506 ~ 15814501 (-)
XLOC_010576 CU861451.1 non-coding upstream 470300 17120064 ~ 17120186 (-)
XLOC_010582 CR936322.1 non-coding upstream 595144 17244908 ~ 17245047 (-)
XLOC_010583 CR936322.2 non-coding upstream 597458 17247222 ~ 17247363 (-)
XLOC_010592 NA non-coding upstream 1055066 17704830 ~ 17706764 (-)
XLOC_010594 NA non-coding upstream 1173683 17823447 ~ 17824848 (-)

Expression


Co-expression Network