Fish Transcriptome and Expression Database

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model fish

XLOC_010554 (CT573799.2)

Basic Information

Item	Value
gene id	XLOC_010554
gene name	CT573799.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	15813506 ~ 15814501 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020689
GTGTGATGAAAGATAATGTGTGGAAGTGTGCTGAAAGGCAAGGTAAAGGCCGCACAGGGGAAGGCTGCTGAGAGACCACTGTACAGTCTGAGGCCTGGCAAATTTCGTGGTGATCAGGGACCTGAGGAGAAAGAGCTGGAGAGCAAAGCGCTGGTTGGGTCCATTTCAAGTGCTACTGACCACTGAGACATCGGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000104466

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00020689	True	195	processed_transcript	0.52	2	15813506	15814501

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_010553	NA	coding	downstream	26702	15786237 ~ 15786804 (-)
XLOC_010552	CT573793.3	coding	downstream	33099	15779159 ~ 15780407 (-)
XLOC_010551	CT573793.2	coding	downstream	104362	15708204 ~ 15709144 (-)
XLOC_010550	has2	coding	downstream	426047	15369634 ~ 15387459 (-)
XLOC_010549	sntb1	coding	downstream	550407	15164983 ~ 15263099 (-)
XLOC_010555	UBE2O	coding	upstream	128386	15942887 ~ 15988320 (-)
XLOC_010556	ankib1b	coding	upstream	227142	16041643 ~ 16120941 (-)
XLOC_010557	fabp11b	coding	upstream	334260	16148761 ~ 16152199 (-)
XLOC_010558	stmn2a	coding	upstream	350528	16165029 ~ 16182319 (-)
XLOC_010559	upp1	coding	upstream	395707	16210208 ~ 16212615 (-)
XLOC_010626	CR392024.2	misc	upstream	5080611	20895112 ~ 20895175 (-)
XLOC_010545	BX324006.2	non-coding	downstream	1370117	14421800 ~ 14443389 (-)
XLOC_010544	NA	non-coding	downstream	1396099	14416346 ~ 14417407 (-)
XLOC_010562	NA	non-coding	upstream	452055	16266556 ~ 16270435 (-)
XLOC_010565	CR848667.2	non-coding	upstream	712474	16526975 ~ 16529972 (-)
XLOC_010567	CR848667.3	non-coding	upstream	758913	16573414 ~ 16573530 (-)
XLOC_010568	NA	non-coding	upstream	778848	16593349 ~ 16604080 (-)
XLOC_010576	CU861451.1	non-coding	upstream	1305563	17120064 ~ 17120186 (-)

Expression

Co-expression Network