XLOC_010556 (ankib1b)


Basic Information

Item Value
gene id XLOC_010556
gene name ankib1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16041643 ~ 16120941 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020691
GGCGGCCGAGGACCGTTCACAACAAAGGCGAGAAGCAGATTTTTTATTTGGAGTCAACACTGTTTCATCAGTTAACTGCGAAATTATTCAGGGtctaaaagaagagaaaaaacgaCAGCTGTCATCGTGCTAATTGGGAAGCACACCATGTCGGCGGTCTGTAGGCCCACAGGCTGAAGAGGTCTGATTGTTCTGGAGAGCTGGCAAGCAAGAGATGGGGAACACAGCCACCAAGTTCCGCAAGGCACTGATCAGTGGAGATGAGGTTCTGGCCTATCAGCTCTACGAGGGCAACCCTCAGTTCAAAGAGTCTCTAGACCCCAATACCTCATATGGGGAACCGTATCAACACAACACCCCACTCCATTATGCTGCCAGACATGCCATGACACGCATACTCAGGTCCTTCCTCTTCAGCAAGGATGGGAACCCCAACAAGCGCAACGTGCACAATGAGACGGCTCTACATGTGTTGTGCATGGGGCCGCTTATCCTGCTCTCTGAAGGGGCTCTGCAGCCACGACTGGCCCGACCTTATGAAGATGAACGCAGGAGAGCTGAGTGCCTCCAGATGATCCTGAAGTGGACTGGCGCCAAGCTAGATCGTGGTAAATATGAGAGTGCTGACGTCAGTGCCACCGATAACAAGAAGAACACACCACTACACTACGCTGCTGCCTCAGGGATGAAGACATGTGTGGAGTTTCTGGTGAAACGCGGCGCTGATCTGTTTGCAGAGAATGAGAACAAGGAGACCCCGTGTGACTGTGCAGAAAGGCAGCACCATAAGGAGCTTGCACTCGGTTTAGAGTCTCAAATGGTCTTCTCCACTGACCCCAATGCAGAGGATATCGAGGCAGAGTATGCAGCCTTGGACCGCAGGGAGttttATGAAGGTTTGCGAGTGCAGGACCTCAGGAGACTAAAGGACATGCTTATTGTAGAGACTGCGGACATGCTGCAAGCTCCTCTCTTCACTGCAGAGGCTCTTCTAAGGGCTCACGACTGGGACAGGGAGAAACTGCTAGAAGCTTGGATGTCTAATGCTGAAGACTGCTGCCAGCGTTCGGGTGTTCAGATGCCCATTCCTCCACCCAGAGGGTACAACACCTGGGACACGCTGCCCTCACCCCGTACACCTCGTACCACCCGCTCATCCATCACCTCCCCGGACGAGATCAGCCTGACCCCTGCTGATGACGATCACTCCCTGTGCGGTATTTGTATGTGCGCTGCTTCCATGTTTGAAGAGCCTGTTGATATTCCTTGTGGTCATGAGTTCTGCAGGGGATGCTGGGAAAGTTTCTTGAATTTGAAGATTCAGGAGGGGGAGGCCCATAATATCTTTTGCCCTGCCTATGACTGCTTCCAGCTGGTTCCTGTCGAGGTCATTGAGAGCATCGTGTCTAAAGAGATGGACAAACGTTATCTTCAGTTTGACATCAAGGCATTTGTAGAGAATAACCCTGCCATCCGGTGGTGCCCAAGGGCTGGCTGTGACAGAGCAGTGCGATTGGCTGGACAAGGACCTGGTGCCAGCACCTCTGACCCGCTCAGTTTTCCTCGACTCCAGGCGCCTGCTGTGGACTGTGGCAAGGGTCATCTCTTCTGCTGGGAATGTCAAGGAGAGGCCCATGAACCATGTGACTGCCAAACATGGAAGATGTGGCTCCAGAAAGTTACTGATATGAAACCAGAAGAACTGGCAGGTGTAAGTGAGGCGTATGAAGATGCTGCCAACTGCCTGTGGTTACTCACCAACTCCAAATCCTGTGCCAACTGCAAATCTCCCATTCAGAAGAATGAGGGATGTAACCACATGCAATGTGCCAAGTGCAAGTATGATTTTTGCTGGATCTGTCTGGAAGAGTGGAAAAAACACAGTTCCTCTACTGGAGGGTACTACCGCTGCACACGATATGAGGTCATTCAGCAAGTGGAGGAGCAGTCTAAAGAGATGACTGTTGAGGCTGAGAAGAAACACAAGAACTTCCAGGAATTAGATCGCTTCATGCATTATTACACACGTTTTAAGAACCACGAACACAGttaccagctggaagaacgcCTGCTAAAGACGGCCAAAGACAAGATGGAACAGCTGAGTAAAGTTCTGAGTGGAAGAGAAGGAGGCCCTCCAGACACTACTTTCATTGAAGACGCAGTGCATGAATTACTCAAGACTCGTCGTATTCTCAAGTGCTCTTACCCTTACGGGTTCTTTCTGGAGCCCAAAAGCACAAAGAAGGAAATCTTTGAACTTATGCAGACTGACTTGGAAATGGTGACTGAAGATCTTGCACAGAAAGTCAACCGGCCTTACCTCCGCACGCCTCGTCATAAGATCATCCGCGCTGCTTGTCTGGTGCAGCAAAAGAGACAGGAGTTTCTGGCCTCTGTAGCTAGAGGTGTGGCCCCCAACGATTCGCCCGAAGCCCCTCGACGCAGTTTTGCTGGTGGAACATGGGACTGGGAGTATTTGGGTTTCGCCTCTCCTGAGGAGTATGCCGAGTTCCAGTACAGACGCAGACACAGGCAGCGCAGGAGAGGAGACATGGCCAGCCTCCGCAGCAACACACCTGACCCTGATGACCCAGGCCACAGCACTTTAGACACGCAAGAAATTGGTGGAGGTCAGAGACCGGGTTTGCCAATGCCTCATAGTTCTCTGGACGAGGACGATCCGAATATCCTGTTGGCCATTCAGCTGTCTCTGCAGGAGTCAGGACTGATGGCTGGTGGGGCTGGTGTTGATGCTCAGGAGATCCTTTCTAATGAAGCTTCTCTGGGGGCCATAGGAACCTCCCTGCCCACTCGGCTTGACCCGGTTCTGTGTGGGATAGATGTTCCCCGTGCTGCCCTGAGCAGCTCTGAGCTCTTAGAGGTGGGTGACAGCCTAAAGAAGCTGGGAAATATCAGTGGCCAGAATGTTCCGCTTCGCTTTGACAATCTCAACAATCCTGCCAGAGATCCCTCAGAGGGTCCTTTCCATAATCCTGCGAGACATATGGAAAGCTCTGATTTCAATTCGGACAACGCCAACCTTCTAGGCAACATCATGGCTTGGTTTCATGACATGAACCCACAGAATATCAGTTTGGTTCCTTCAGCCGGTGCAATGCATCAAGAATTCGCCAGTCAGTCAGCGAGGATGCCGTCAGAGTCAGATTGTGCTGTACCGCAGTGGATAACAGGGGGCGACAGAGAGGTAGAGCGAGAGTTTGACTCTGGCATCATCGCAGGAGAGCGGGAGCCTGTCAGGCCAACACAGCTGGACCTAATAGGTCTAGATATGTGTCCTCCTCCTTCAACTGTCGAGTTGGGCGAAACTCCGAGTGCTTTGAACCCGTGTCACTCCGATACCCCAAAATGTGACTCAGACCCTGACCAGCCTAGCAGTAGCTCCTCTGAATGGGAGGGTCAGGTACACCTTGTATGAAATACTGACTTTAGCTACTATCTAAGCCACTTTTTTTGATAAAGTAGCTGGCGGAATTCACCCCGAGGAACAAGATTAATGACAACGAGAAGCTTTGTATTGTTAGATATGTAGAAATCGAAACAGTACTCGTCGAGTACTTGTGTGTTTCAGGCCTTTGTGCTTATAAGGCATGTGTTCTTTGCTTACTGAAAATAACTCTTTCTGATCGTGGAGTGTTAAACACTTTTAGAGTCAGTAACTGAACCACAAAGCGCTAAGAAGATAAGACGAGTGTTGAAGTAGCAAGAATAATCTACTGTACAGAACGGGACAGTGTTCGGTGTGAGTTCCTGTTCGCCTGATTCAAAAAGATATATAAGATACTGTAGGTGCCAAACACTGGCTTGCACACGCCGAGTGAATGGTGTGCAGATCGTGCCTGCTGCTGAGGGCCTAGTCGCCCTGTTGAGTACACTATCCTTCCTTTAAACTAGACCTGTAGTGTTAGAGAAGTACAGCGTCACACTCTGAACAGGTTCCGTAATGCTAATTATCACAGAAACTAAACGAACGTCAGCTCTAGTTGCAGTCGACTTTTCTGTTTTGGTCAAACGTAATCACTGTAACCCGTCACTGGTTAATTAGAACGGCGAGATTTAAACGGTAGTCTGGAAAACGTTTTTCTATTTGCAACTTATCACAGTGCCTTTTCTGTGAAACTTCTCTTAATTTACAGCCACTCTGAGCCCCAGAGTTTGGTACGTTCTATATACATCGTGTTTGTACATTCAGGTGGCGATTACGCAAACCGAActcaatgttttttaaaagacatttttatatttgtttggttGTCTTTTTGCATGCCTCTGGCCCcttccacacacacaaaaaagttttttttaaagcaaaagttGAATGAAA

Function

symbol description
ankib1b Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human ANKIB1 (ankyrin repeat and IBR domain containing 1).

GO:

id name namespace
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100920-6 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human ANKIB1 (ankyrin repeat and IBR domain containing 1).

Ensembl:

ensembl_id ENSDARG00000076829

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020691 True 4345 mRNA 0.49 20 16041643 16120941

Neighbor

gene id symbol gene type direction distance location
XLOC_010555 UBE2O coding downstream 53323 15942887 ~ 15988320 (-)
XLOC_010554 CT573799.2 coding downstream 227142 15813506 ~ 15814501 (-)
XLOC_010553 NA coding downstream 254839 15786237 ~ 15786804 (-)
XLOC_010552 CT573793.3 coding downstream 261236 15779159 ~ 15780407 (-)
XLOC_010551 CT573793.2 coding downstream 332499 15708204 ~ 15709144 (-)
XLOC_010557 fabp11b coding upstream 27820 16148761 ~ 16152199 (-)
XLOC_010558 stmn2a coding upstream 44088 16165029 ~ 16182319 (-)
XLOC_010559 upp1 coding upstream 89267 16210208 ~ 16212615 (-)
XLOC_010560 gra coding upstream 101453 16222394 ~ 16226180 (-)
XLOC_010561 rbm12b coding upstream 111680 16232621 ~ 16237860 (-)
XLOC_010626 CR392024.2 misc upstream 4774171 20895112 ~ 20895175 (-)
XLOC_010545 BX324006.2 non-coding downstream 1598254 14421800 ~ 14443389 (-)
XLOC_010562 NA non-coding upstream 145615 16266556 ~ 16270435 (-)
XLOC_010565 CR848667.2 non-coding upstream 406034 16526975 ~ 16529972 (-)
XLOC_010567 CR848667.3 non-coding upstream 452473 16573414 ~ 16573530 (-)
XLOC_010568 NA non-coding upstream 472408 16593349 ~ 16604080 (-)
XLOC_010576 CU861451.1 non-coding upstream 999123 17120064 ~ 17120186 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_06649431_06675045 ANKIB1, ANKIB1B coding CI01000016 null 6648456 ~ 6677265 (-)
bowfin (Amia calva) AMCG00021518 NA coding CM030130.1 CM030130.1 20314180 ~ 20339738 (+)