XLOC_010558 (stmn2a)


Basic Information

Item Value
gene id XLOC_010558
gene name stmn2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16165029 ~ 16182319 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020693
CTCCGCGCTCCTCATTGTGCTCTGCTGACTCAGTGCCTTAAGCATCATCCGCTCTCAAGCCAGTGGCACAAACCACGACCGTTGTGGAAATTATTACGGATTCAAGAAACGACACCATGGCCAAAACAGCTATCGCATACAAGGAGAAGATGAAGGAGCTGTCCATGCTCTCGCTTATTTGCTCCTGCTTCAGCCCACAGACACGCAACAACATTGTCTGTGAGTTTGAAGATATGGAAGTAAAACCCATAAATAAAAGGGCCTCAGGTCAGGCCTTTGAGGTGATCTTGAAGCCCCCTTCACCGGTGTCAGACGCGGCCCACAGCATCACCTCTCCTCCAAAGAAGAGGGACATGTCACTGGATGACATCCAGAAGAAGCTGGAGGCGGCTGAGGACCGCAGGAGGTCCCAGGAAGCTCAGGTGCTCAAAGCTCTGGCTGAGAAACGTGAGCATGAGAGGGATGTGCTGCTCAAAGCCATGGAGGAGAACAGCAATTTCAGCAAGATGGCGGAAGAAAAGCTCATTCTGAAGATGGAGCAGAACAAGGAAAACCGTGAGGCCCACCTGGCAGCCATGATAGATCGCCTGCATGAGAAGGAGCGACATGCTGCAATCGTCCGCAGGAACAAGGAGCTGAGGGAACAGATAGTAGAGTGAAGCTCTCCTCCTCCTTTTCATGCCCTTCATCAGCCGACCTCCATCCTATtctgctcacacacactcacacacacaaccaGTCAAAACAACTAGTATCACAGTCCTATACTGTTTGAATGGTCTTGCTTGATTTCATAGAGTAATGGGAAGACACAagtattattttgtaaatacatcttttttaaatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcagattGAATGATAAATCAGATGTATCAAATCTACAGGATGCATTGCGTTATTTCTTTTATTGGAATTATGTTTTTGTCAGGTTCAGGCACGTCTGGTTTGATAACGTGAAAGGTTTTTCGATGTTGTAAGTAAGCTGCTCGCTTACGTTTGCGGTGTTAAATGATGTGAAGTTTGGTGTAATTGTgaagaatgcaaaaaaaaaaaagcatcagtgCTCAGGCCCCACAGATCTACATTCTAAAAAGCAAACATACCCCAAGACTCATGAATATATAGTGCACTTAAGTTTATATACAGCATGATCGAAAGCGTAGCCACCTTTTCCTGAACAAATAGCTTGAGATATGAGTACTGATAACAATAGTGTCTCATTTGTAACCTTTTGCATTTTCGTTTCTTTGCTCAGTATCCTCTGTGAAATTAAATATCACCCTATTGAAATCTGCATGTCGACATCTGCAAACTTGCTCTTTTGTTGGCTGATGATTGGATCGCTGCACCCTTTTTGGACCCTTCGGATAGACAGCTTGACATGGCCTGCGTTAAActgcaaaagaataaaaaaaataatcagccAGTTCCGACCCTGTTGCTCTTTAAATGACCCACTCATTGATTCAGGCCTTCGGCACTCAAGGCTGATGTTTGTCATCTAGCAGGAGTCCACTTCATCTTCATTAGTACAGCAGCGGTGTAGTTAAAGGAGCTGAATGTTCTGACATCTTTCTGGCTTGATAAAATAGGTAACATCTTTACCAGCTGAATGTATCCTCATAAACTCCCAATTACAGCCTTTGACGTGTGACTATTTTCTATTAGCTTAATTTGGATGAGACtggagtgaatgtgtgtgtgcgtgcgtgtgtgtgtctgccccTGTTAGGCTGACTGAGCATTTGTGACCTTTATCTCTGGAAGTGAAGCGATGGGAAGATGCTGAATATGCACTGAATGATTATGgtttttaagttaaattattttCAGATCACTGTCTTCTCTATAAATATGCTTGAAGTGTCTTCAGCTGCCAAAATTGTCTTTCCCCCCTCTCATTTCTGTGTGTGCAAAACTTTGGTGAAAATAAAGGTTTGGGGTTCTGtgaacatggtaaaaaaaaa

Function

symbol description
stmn2a Predicted to enable tubulin binding activity. Acts upstream of or within nervous system development. Predicted to be active in cytoplasm and growth cone. Is expressed in gut; head; nervous system; spinal cord neural tube; and trigeminal placode. Orthologous to human STMN2 (stathmin 2).

GO:

id name namespace
GO:0051493 regulation of cytoskeleton organization biological_process
GO:0007019 microtubule depolymerization biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0007399 nervous system development biological_process
GO:0031175 neuron projection development biological_process
GO:0043005 neuron projection cellular_component
GO:0030426 growth cone cellular_component
GO:0005737 cytoplasm cellular_component
GO:0015631 tubulin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-85 Predicted to enable tubulin binding activity. Acts upstream of or within nervous system development. Predicted to be active in cytoplasm and growth cone. Is expressed in gut; head; nervous system; spinal cord neural tube; and trigeminal placode. Orthologous to human STMN2 (stathmin 2).

Ensembl:

ensembl_id ENSDARG00000033234

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020693 True 2102 mRNA 0.42 5 16165029 16182319

Neighbor

gene id symbol gene type direction distance location
XLOC_010557 fabp11b coding downstream 12830 16148761 ~ 16152199 (-)
XLOC_010556 ankib1b coding downstream 44088 16041643 ~ 16120941 (-)
XLOC_010555 UBE2O coding downstream 176709 15942887 ~ 15988320 (-)
XLOC_010554 CT573799.2 coding downstream 350528 15813506 ~ 15814501 (-)
XLOC_010553 NA coding downstream 378225 15786237 ~ 15786804 (-)
XLOC_010559 upp1 coding upstream 27889 16210208 ~ 16212615 (-)
XLOC_010560 gra coding upstream 40075 16222394 ~ 16226180 (-)
XLOC_010561 rbm12b coding upstream 50302 16232621 ~ 16237860 (-)
XLOC_010562 NA coding upstream 84237 16266556 ~ 16270435 (-)
XLOC_010563 nradd coding upstream 135709 16318028 ~ 16341027 (-)
XLOC_010626 CR392024.2 misc upstream 4712793 20895112 ~ 20895175 (-)
XLOC_010552 CT573793.3 non-coding downstream 384622 15779159 ~ 15780407 (-)
XLOC_010551 CT573793.2 non-coding downstream 455885 15708204 ~ 15709144 (-)
XLOC_010545 BX324006.2 non-coding downstream 1721640 14421800 ~ 14443389 (-)
XLOC_010565 CR848667.2 non-coding upstream 344656 16526975 ~ 16529972 (-)
XLOC_010567 CR848667.3 non-coding upstream 391095 16573414 ~ 16573530 (-)
XLOC_010568 NA non-coding upstream 411030 16593349 ~ 16604080 (-)
XLOC_010576 CU861451.1 non-coding upstream 937745 17120064 ~ 17120186 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_06720165_06726223 STMN2A, STMN2B, STMN2 coding CI01000016 null 6719505 ~ 6726223 (-)
bowfin (Amia calva) AMCG00021796 LOC105009370,LOC106588819,LOC100696657,LOC107596629,LOC102210154,LOC107685565 coding CM030130.1 CM030130.1 30256031 ~ 30265454 (-)