CI01000016_06720165_06726223 (STMN2A, STMN2B, STMN2)


Basic Information

Item Value
gene id CI01000016_06720165_06726223
gene name STMN2A, STMN2B, STMN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6719505 ~ 6726223 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_06720165_06726223.mRNA
TGCCTTAAGCATCATCCGCTCTCAACGCCACTGGCACAAACCACGACCATTGTGGAAAATAATACCGATTCAAGAAAGGACACCATGGCCAAAACAGCTATCGGCTCCCGAGCCGTGGGCCTGCTTGTTGATATTGCTAAGAATGGCTGGGGGGTTGCAGGAGGCCGAGGAGACGCAGACTGGGAGACCGGCCAGCCCTGCAGCAGTGGGATGCTGCATGGTGGCCTTTGCAGCACCGGACAAATAAGTATTGACACTATGTTGGACACCACATACAAGGAGAAGATGAAGGAGCTGTCCATGCTCTCACTTATTTGCTCCTGCTTCAGCCCACAGACACGCAACAACCTTGTCTGTGAGTTTGAAGATATGGAAGTAAAGCCCATAAACAAAAGGGCTTCAGGCCAGGCCTTCGAGGTGATCCTGAAACCGCCCTCACCGGTGTCAGATGTGGCCCACAGCATCACCTCCCCTCCAAAGAAGAGGGATGTGTCACTGGAAGACATCCAGAAGAAATTGGAGGCTGCCGAGGACCGCAGAAGGTCCCAGGAAGCTCAGGTGCTCAAAGCTCTGGCTGAGAAACGTGAGCATGAGAGGGATGTGCTGCTCAAAGCCATGGAGGAAAACAGCAACTTCAGCAAGATGGCAGAGGAAAAGCTCATCCTGAAGATGGAGCAGATCAAGGAAAATCGGGAGGCTTACCTGGCAGCCATGATGGACCGCTTGCATGAGAAGGAGCGACATGCTGCAATTGTCCGCAGGAACAAGGAGCTGAGGGAAGAGCTAATAGCGTGAAGTTCTCCTCCTCCTCATACCCTTCATCAGCCAACCTGTCATCCTATCCTGCTCACGCACACTCACACACAACCACTGGTAAAATCCAGTCAAAACAACTAGCATCACACTCGTATACTGTTTGAACGGTCTTGCTTGATTTCATAGATTAATGGGAAGACACAAGTATTATTTTGTAAATACATCTTTTTTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGTCTATCTATCTATCTATCTATCTGTCTATCTGTCTATCTATCTATCAGATTGAATGATAACAAATCAAATGTATCAAGTCTACATGGTACATTATTAATTCTTTTATTATTATTGTTTGTCAGTTTCTCAGTTTTTTTGTTTTTTTCAGGCACGTCTGGTTTGATCATGTGAAAGGTTTTTGGTGTTGTGAGAAAGCTGCTCGCTTACGTTTGCAGTGTTAAATGATGTAAAGTTTGGTGTAATTGTGAAGAATGCAAAAAGCTTCAGTGCTCAGGCCCCAGGTCAACATAGATTTTAAAAAGGAAACATACCCCAAGACTCATAAATATATAGTGCACTTAAGTTTATATACAGCATGATCAAGACATAGCCACTTTTTGCTGAACAAATAGCTTGAAGTATGAGTACTGAAACAAATAAA

Function

symbol description
stmn2a Predicted to enable tubulin binding activity. Acts upstream of or within nervous system development. Predicted to be active in cytoplasm and growth cone. Is expressed in gut; head; nervous system; spinal cord neural tube; and trigeminal placode. Orthologous to human STMN2 (stathmin 2).
stmn2b Predicted to enable tubulin binding activity. Acts upstream of or within nervous system development. Predicted to be active in cytoplasm and growth cone. Is expressed in several structures, including basal plate midbrain region; nervous system; pronephric duct; spinal cord neural tube; and trigeminal placode. Orthologous to human STMN2 (stathmin 2).
stmn2 Enables calcium-dependent protein binding activity. Involved in cellular response to nerve growth factor stimulus; regulation of microtubule polymerization or depolymerization; and regulation of neuron projection development. Located in several cellular components, including growth cone; lamellipodium; and neuronal cell body.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_06720165_06726223.mRNA True 1455 mRNA 0.45 6 6719505 6726223

Neighbor

gene id symbol gene type direction distance location
CI01000016_06712886_06713770 NA coding downstream 3584 6711862 ~ 6715921 (-)
CI01000016_06692104_06696977 NA coding downstream 22181 6691887 ~ 6697324 (-)
CI01000016_06649431_06675045 ANKIB1, ANKIB1B coding downstream 42240 6648456 ~ 6677265 (-)
CI01000016_06508677_06514489 HAS2 coding downstream 205016 6508137 ~ 6514489 (-)
CI01000016_06424554_06462224 SNTB1 coding downstream 256887 6424115 ~ 6462618 (-)
CI01000016_06729420_06733577 UPP1 coding upstream 2554 6728777 ~ 6733577 (-)
CI01000016_06743403_06745585 NA coding upstream 16801 6743024 ~ 6745773 (-)
CI01000016_06788704_06796860 NRADD coding upstream 62449 6788672 ~ 6796860 (-)
CI01000016_06814184_06871990 NBEAL2 coding upstream 87801 6814024 ~ 6871990 (-)
CI01000016_06905366_06911635 KIFC3 coding upstream 179092 6905315 ~ 6911635 (-)
G97517 NA non-coding downstream 76700 6642270 ~ 6642805 (-)
G97516 NA non-coding downstream 77393 6641867 ~ 6642112 (-)
G97469 NA non-coding downstream 168476 6486089 ~ 6551029 (-)
G97468 NA non-coding downstream 232302 6486730 ~ 6487203 (-)
G97465 NA non-coding downstream 248734 6470432 ~ 6470771 (-)
G97428 NA non-coding upstream 904 6727127 ~ 6727509 (-)
G97530 NA non-coding upstream 78711 6804934 ~ 6805338 (-)
G97545 NA non-coding upstream 218122 6944345 ~ 6944646 (-)
CI01000016_06998707_07047702 NA non-coding upstream 318398 6998534 ~ 7047702 (-)
G97557 NA non-coding upstream 319434 7045657 ~ 7045896 (-)
G97341 NA other downstream 559784 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 1301288 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 1388659 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 1796101 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 2788454 3920055 ~ 3931162 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 2162610 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 2210566 8925960 ~ 8945229 (-)
G98679 NA other upstream 2508773 9234996 ~ 9239929 (-)
G98691 NA other upstream 2529879 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 2783399 9509622 ~ 9512428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010558 stmn2a coding NC_007127.7 CM002900.2 16165029 ~ 16182319 (-)