CI01000016_06743403_06745585


Basic Information

Item Value
gene id CI01000016_06743403_06745585
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6743024 ~ 6745773 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_06743403_06745585.mRNA
AAAAAGTTTAGTTAATTAGCCGTAATATGTGTCTTTCATCTGTATGGATGCTAGAAGTGATTTGTGTAATTTCTTGATACTTGTATAAACTGTTTGATGTTTCTCTCTTGAAAGTGCAGTCAGCTGATGAGCTGTGTTTGTGAATTGAGTTCATATTACCTGTACATTTGCATGTAGAAGCTGAAAGAATGATGTTAAAGGTTGGAAAACTAGTCTTTCCTGTTAATCTAAAGTGCTGTTGTGTGTGCTCCATCATGGCTGTGGTCATCCGATTACAGGGACTCAGAATCACAGCTGGTTCTGAGGACATTCGCAATTTCTTCACTGGGCTCAGAATCCCTGATGGTGGGGTTCATATAATTGGTGGGGAGCTTGAGGAAGCTTTTATAATATTTGCATCTGATGAAGATGCGAGACGAGCGATGGCGCGCTCGGGGGGCTGCATTAAGGGCTCTCCGGTCAACTTGCTCCTGAGTAGCAAGTCAGAAATGCAGAGTGTTCTCGAGGAAAGCACTAGAAGGTCTGAGTTAAAAGGCAGGGGAATATACAAGGAGGGTGTCAAAAGACCTTCTGCGGAACGAGGTCCTCTGCCATTCAATAAAGACCCGAGAGCAGACGTACGAAGGCCGGATCTTCAAGAGATGAGGAACAGGCCCTCTCCATCTTCATTCAATGAGATACGACACCAGAGAGAAGCGGAAGTGCCAGAGAGAGCTGATCTTTATTTAAAGTTGACAGGGATGCCATTCTCTGCAACAAAGGAAGATGTCTATACCTTTTTTAGTGGGATAAAGGTTGAAGATGTTCTGTTTTTGAGAAACCCCCGAGGAACGTTCAATGGACAAAGTATTGTGCGCTTGGCTACCAAAGAGGATGTGATCGAAGGTCTGAAAAGGGATCGACAATACATGGGGGTGCGGTATATACAACTATCAAGATGCTCCGAGGAGCAGTGGCTGGCAGAAGGAGGTGTCGTACCGGACACTCGGAAAAGACCGTCCTTAGAGCGAGTGAGATCTCGATCTCCCGTTTCCTACAGGTCGAGATCACGCTCGCCCCCTCATGAAGAATACTGCGTCATGTTTGAGAACTTGCCTCATGCGGTTGAAAAGAGAGATTTGAGGATGTTTCTTCATCCGGTTACTTTGAAGGATGACCAGATTATTATCTTTGCCCAAAAAAAGGACGATAAGACCAAATCGGCTGTTGTGGTGTTTAGAAATCTCACAGACTATTGTGCTGGCTTGGCTCATAATAAGGAATTGTTGCTGCATAAGGTAGTGTACGTGTCACCCATCTCCAAGGAGAAAATGGTCACTGTGTTGGAATCGTCCGTTGATGAGAGAGATGAGGGAAAAGGGTCGAGACGATCAGCTGAAGTGCCCCAGTCTCAACGAAACACTCCTGACTCTCAGTTGAGGTGTGTCTACGTACGCAATCTCCCATTTGATGTTCGTAAGGTGGAGATCATGGACTTCTTTCATGGATTTCCACTTTCAGAGGATAGGGTGGTCTTATTGCATGACGATAGAGGAGCTGGGCTCGGTGAGGCTTTGGTGATCTTCCAGTCTGAGAAGGAAGCCATGACGGCACAGTCCCTAAACGGACAGAGGTTTCTTGGATCCGAGGTCATGCTTAAGTGCATAACGATGGCCCAGATGCAGAATTTTGGTGTGAATGAGCAGATGACGGTTAGCCCACCAGAAAGGAACGAAATTTTGAATGACGGTCCTCGTTTTTCGAACATCCAGATGCCTCAAGATGATTGTGAGATGCAGCCTAATTTGCGCCAGGATTTTGGAGGTCGTGATCACTTTGAGCCTAATTTTGGCCGCAATAATGCATTTGGGCCTGGACTGGATGGCAATGGACGTCAACGTTACGGATCACCTGACCAACAACTTGATGGTCCAACCGGTGTTAAATTGCTCAATCTACCCTCTCAGATAAGGATCGATGAGATTTATGACTTCTTCTACGGATACAGATTGATTCCAGGATCTGCCTCATTGCAGTATGATAGAAATGGAGCTCCCAGACGTGCTGCAACGGTAGTGTTCGAAACCTACAGAGAGGCACTCACTGCTCTTCAAGAATTAAATGGAAGACCAATTGGCACCAGGAAGATTCAGATTGTGTTCGATTAGATATGCTTTTGGACTACAGTGTTGATGAAACTTGTGTTTTTGTTTTTATTTTTTTAAGTTGTATATGCATTTTCAGTGATTTGACAAGTGCAGACATATTTTCATTTTTTTTTGAAGTACTGCTTTAATTTAGATTCATACCTTTATATCTTAACTATTTGACAATGATGCATTTGTGTGCATGTCAGTGACAGTATCTATACTCAGTATTATTTGTGCTGTCAAATATTTTCCCGCTCAGAGTACTGACTTTTCTAATCTAATTAAATTTCACTGTACAGATGTCAGTAATATTTTGTTTTCACATGAAAGCAGATAAAAGATAAAAGAATCTTCTTAACATTGTGAGATTGTGAATTTCCTACTACGCCCAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_06743403_06745585.mRNA True 2526 mRNA 0.43 2 6743024 6745773

Neighbor

gene id symbol gene type direction distance location
CI01000016_06729420_06733577 UPP1 coding downstream 9447 6728777 ~ 6733577 (-)
CI01000016_06720165_06726223 STMN2A, STMN2B, STMN2 coding downstream 16801 6719505 ~ 6726223 (-)
CI01000016_06712886_06713770 NA coding downstream 27103 6711862 ~ 6715921 (-)
CI01000016_06692104_06696977 NA coding downstream 45700 6691887 ~ 6697324 (-)
CI01000016_06649431_06675045 ANKIB1, ANKIB1B coding downstream 65759 6648456 ~ 6677265 (-)
CI01000016_06788704_06796860 NRADD coding upstream 42899 6788672 ~ 6796860 (-)
CI01000016_06814184_06871990 NBEAL2 coding upstream 68251 6814024 ~ 6871990 (-)
CI01000016_06905366_06911635 KIFC3 coding upstream 159542 6905315 ~ 6911635 (-)
CI01000016_06963083_06974158 NA coding upstream 217310 6963083 ~ 6974188 (-)
CI01000016_06975396_06992012 NA coding upstream 229244 6975017 ~ 6992012 (-)
G97428 NA non-coding downstream 15515 6727127 ~ 6727509 (-)
G97517 NA non-coding downstream 100219 6642270 ~ 6642805 (-)
G97516 NA non-coding downstream 100912 6641867 ~ 6642112 (-)
G97469 NA non-coding downstream 191995 6486089 ~ 6551029 (-)
G97530 NA non-coding upstream 59161 6804934 ~ 6805338 (-)
G97545 NA non-coding upstream 198572 6944345 ~ 6944646 (-)
CI01000016_06998707_07047702 NA non-coding upstream 298848 6998534 ~ 7047702 (-)
G97557 NA non-coding upstream 299884 7045657 ~ 7045896 (-)
G97558 NA non-coding upstream 300316 7046089 ~ 7046309 (-)
G97341 NA other downstream 583303 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 1324807 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 1412178 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 1819620 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 2811973 3920055 ~ 3931162 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 2143060 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 2191016 8925960 ~ 8945229 (-)
G98679 NA other upstream 2489223 9234996 ~ 9239929 (-)
G98691 NA other upstream 2510329 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 2763849 9509622 ~ 9512428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010561 rbm12b coding NC_007127.7 CM002900.2 16232621 ~ 16237860 (-)