CI01000016_06729420_06733577 (UPP1)


Basic Information

Item Value
gene id CI01000016_06729420_06733577
gene name UPP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6728777 ~ 6733577 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_06729420_06733577.mRNA
ATGCCGCTGGGTGAAGAGAAAAATGGGACATACGATAGGTCAATATATGTGAACAATCCCCATTTAGACTCCATGACAGATGACATCCTTTACCATTTTAACCTGGGAACATCCACTCACGACTTGGCAGCGATGTTTGGAGATGTCAAATTTGTGTGCGTAGGGGGAAGTCCATGGAGGATGAAGTCTTTCACTGAATACATTGCCAAAGAACTGGGGCTTTCAGACCCAAATGCAGAATATCCAAATATATGTGCAGGAACCGATCGCTACGCCATGTACAAAATTGGACCTGTGCTGTCTGTCAGTCATGGCATGGGTATCCCATCAATCTCTATAATGTTGCATGAGCTCATCAAGCTACTTTATCATGCCCGCTGCACTGATGTCACCGTAATGCGCATCGGAACGTCAGGTGGAATAGGTTTAAAGCCAGGGACTGTGGTGATTACCAAACAGTCGGTGGATTCTGTGTTTCAGCCTCGCCTTGAGCAGATCATCCTGGGTAAATCAGTGGTCAGGAGCACAGAACTCGATGGGGAACTTGCAGAGGAGCTGCTTCAGTGTGGCAAAGAACTTGCAGAGTTTGAGACTGTCATTGGTAACACAATGTGCACCCTTGACTTCTACGAAGGTCAAGCGCGGCTGGATGGGGCCTTCTGCTCATACACTGAAGAAGATAAACAGAGCTATCTTGCCGAAGCCTATGCCGCTGGGGTTCGTAACATTGAGATGGAGTCATCTGTGTTTGCGGCCATGTGCAAACTGAGCAATCTTCGAGACAGACTGAAAGGAGACCAGCTGACCAGCTCTCATGACGTCCTGAATAACTACCAGCAGCAACCTCAGGTCCTGGTCGGGCATTACATCAAAAAGAAGCTGAATGCCTCCAAGAAAAGCTAGTTCACTACTAGCCAGAAAACTTTCCAAGCAAACTTTCAGAGAGCTGAAGGTAGGGAACAGTATAGTGCAGTTTTGATGAGGACAATGATTATATTAATATATGGTTAAAAAAAAAAATGCAGCTCTTAAATGTTGTTCAGTTTTATAAAAAGTAACAGAAATACTTTAATTTTCTATGGTTTAGCACTGCGGTTATTAACAAGCTCATCCAAATGAATGCCTTGAATGTAATACCTTCTTTTACTTGTTTTGAAATGGTAATAGGCACATTATGTTCTAGACGGTTTGATTTGTCTTAAATACCGGATATTTATTATTGTTTTAAAAGTTACTTGTCTTAAAACTACTCCTAATGAAGTAGTTGTGTAAAAGGGAAAGATGTTTTAGAAATGAGAGAGAACTAAGCAGTTTAGGCACTAGCTACATTAGAAGGGTCCAAAGAGCATTTTCAAATGACAGTAAACCTCTCTTGCTTATGTTTATGTGTATGGTTGTTACAAACAAACTGTAAAATTCTACTGTAATGATCACAAATGTCTTAAGAAATATTATGCAATATTTAACTAAGTTTGCAATGTTTAACATGCAAGTGTTATTTTAATTGTCACTGAATGTTTTGTTATACAGCATTCTGAGAAATAAA

Function

symbol description
upp1 Predicted to enable uridine phosphorylase activity. Predicted to be involved in UMP salvage. Predicted to act upstream of or within nucleoside metabolic process and nucleotide catabolic process. Predicted to be located in cytoplasm. Orthologous to human UPP1 (uridine phosphorylase 1).

NR:

description
uridine phosphorylase 1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K00757 udp, UPP; uridine phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_06729420_06733577.mRNA True 1546 mRNA 0.41 7 6728777 6733577

Neighbor

gene id symbol gene type direction distance location
CI01000016_06720165_06726223 STMN2A, STMN2B, STMN2 coding downstream 2554 6719505 ~ 6726223 (-)
CI01000016_06712886_06713770 NA coding downstream 12856 6711862 ~ 6715921 (-)
CI01000016_06692104_06696977 NA coding downstream 31453 6691887 ~ 6697324 (-)
CI01000016_06649431_06675045 ANKIB1, ANKIB1B coding downstream 51512 6648456 ~ 6677265 (-)
CI01000016_06508677_06514489 HAS2 coding downstream 214288 6508137 ~ 6514489 (-)
CI01000016_06743403_06745585 NA coding upstream 9447 6743024 ~ 6745773 (-)
CI01000016_06788704_06796860 NRADD coding upstream 55095 6788672 ~ 6796860 (-)
CI01000016_06814184_06871990 NBEAL2 coding upstream 80447 6814024 ~ 6871990 (-)
CI01000016_06905366_06911635 KIFC3 coding upstream 171738 6905315 ~ 6911635 (-)
CI01000016_06963083_06974158 NA coding upstream 229506 6963083 ~ 6974188 (-)
G97428 NA non-coding downstream 1268 6727127 ~ 6727509 (-)
G97517 NA non-coding downstream 85972 6642270 ~ 6642805 (-)
G97516 NA non-coding downstream 86665 6641867 ~ 6642112 (-)
G97469 NA non-coding downstream 177748 6486089 ~ 6551029 (-)
G97468 NA non-coding downstream 241574 6486730 ~ 6487203 (-)
G97530 NA non-coding upstream 71357 6804934 ~ 6805338 (-)
G97545 NA non-coding upstream 210768 6944345 ~ 6944646 (-)
CI01000016_06998707_07047702 NA non-coding upstream 311044 6998534 ~ 7047702 (-)
G97557 NA non-coding upstream 312080 7045657 ~ 7045896 (-)
G97558 NA non-coding upstream 312512 7046089 ~ 7046309 (-)
G97341 NA other downstream 569056 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 1310560 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 1397931 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 1805373 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 2797726 3920055 ~ 3931162 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 2155256 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 2203212 8925960 ~ 8945229 (-)
G98679 NA other upstream 2501419 9234996 ~ 9239929 (-)
G98691 NA other upstream 2522525 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 2776045 9509622 ~ 9512428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010559 upp1 coding NC_007127.7 CM002900.2 16210208 ~ 16212615 (-)