RNA id: TCONS_00020693


Basic Information

Item Value
RNA id TCONS_00020693
length 2102
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_010558
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16165029 ~ 16182319 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCGCGCTCCTCATTGTGCTCTGCTGACTCAGTGCCTTAAGCATCATCCGCTCTCAAGCCAGTGGCACAAACCACGACCGTTGTGGAAATTATTACGGATTCAAGAAACGACACCATGGCCAAAACAGCTATCGCATACAAGGAGAAGATGAAGGAGCTGTCCATGCTCTCGCTTATTTGCTCCTGCTTCAGCCCACAGACACGCAACAACATTGTCTGTGAGTTTGAAGATATGGAAGTAAAACCCATAAATAAAAGGGCCTCAGGTCAGGCCTTTGAGGTGATCTTGAAGCCCCCTTCACCGGTGTCAGACGCGGCCCACAGCATCACCTCTCCTCCAAAGAAGAGGGACATGTCACTGGATGACATCCAGAAGAAGCTGGAGGCGGCTGAGGACCGCAGGAGGTCCCAGGAAGCTCAGGTGCTCAAAGCTCTGGCTGAGAAACGTGAGCATGAGAGGGATGTGCTGCTCAAAGCCATGGAGGAGAACAGCAATTTCAGCAAGATGGCGGAAGAAAAGCTCATTCTGAAGATGGAGCAGAACAAGGAAAACCGTGAGGCCCACCTGGCAGCCATGATAGATCGCCTGCATGAGAAGGAGCGACATGCTGCAATCGTCCGCAGGAACAAGGAGCTGAGGGAACAGATAGTAGAGTGAAGCTCTCCTCCTCCTTTTCATGCCCTTCATCAGCCGACCTCCATCCTATtctgctcacacacactcacacacacaaccaGTCAAAACAACTAGTATCACAGTCCTATACTGTTTGAATGGTCTTGCTTGATTTCATAGAGTAATGGGAAGACACAagtattattttgtaaatacatcttttttaaatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcagattGAATGATAAATCAGATGTATCAAATCTACAGGATGCATTGCGTTATTTCTTTTATTGGAATTATGTTTTTGTCAGGTTCAGGCACGTCTGGTTTGATAACGTGAAAGGTTTTTCGATGTTGTAAGTAAGCTGCTCGCTTACGTTTGCGGTGTTAAATGATGTGAAGTTTGGTGTAATTGTgaagaatgcaaaaaaaaaaaagcatcagtgCTCAGGCCCCACAGATCTACATTCTAAAAAGCAAACATACCCCAAGACTCATGAATATATAGTGCACTTAAGTTTATATACAGCATGATCGAAAGCGTAGCCACCTTTTCCTGAACAAATAGCTTGAGATATGAGTACTGATAACAATAGTGTCTCATTTGTAACCTTTTGCATTTTCGTTTCTTTGCTCAGTATCCTCTGTGAAATTAAATATCACCCTATTGAAATCTGCATGTCGACATCTGCAAACTTGCTCTTTTGTTGGCTGATGATTGGATCGCTGCACCCTTTTTGGACCCTTCGGATAGACAGCTTGACATGGCCTGCGTTAAActgcaaaagaataaaaaaaataatcagccAGTTCCGACCCTGTTGCTCTTTAAATGACCCACTCATTGATTCAGGCCTTCGGCACTCAAGGCTGATGTTTGTCATCTAGCAGGAGTCCACTTCATCTTCATTAGTACAGCAGCGGTGTAGTTAAAGGAGCTGAATGTTCTGACATCTTTCTGGCTTGATAAAATAGGTAACATCTTTACCAGCTGAATGTATCCTCATAAACTCCCAATTACAGCCTTTGACGTGTGACTATTTTCTATTAGCTTAATTTGGATGAGACtggagtgaatgtgtgtgtgcgtgcgtgtgtgtgtctgccccTGTTAGGCTGACTGAGCATTTGTGACCTTTATCTCTGGAAGTGAAGCGATGGGAAGATGCTGAATATGCACTGAATGATTATGgtttttaagttaaattattttCAGATCACTGTCTTCTCTATAAATATGCTTGAAGTGTCTTCAGCTGCCAAAATTGTCTTTCCCCCCTCTCATTTCTGTGTGTGCAAAACTTTGGTGAAAATAAAGGTTTGGGGTTCTGtgaacatggtaaaaaaaaa

Function

GO:

id name namespace
GO:0051493 regulation of cytoskeleton organization biological_process
GO:0007019 microtubule depolymerization biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0007399 nervous system development biological_process
GO:0031175 neuron projection development biological_process
GO:0043005 neuron projection cellular_component
GO:0030426 growth cone cellular_component
GO:0005737 cytoplasm cellular_component
GO:0015631 tubulin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-85 Predicted to enable tubulin binding activity. Acts upstream of or within nervous system development. Predicted to be active in cytoplasm and growth cone. Is expressed in gut; head; nervous system; spinal cord neural tube; and trigeminal placode. Orthologous to human STMN2 (stathmin 2).

Ensembl:

ensembl_id ENSDART00000103815

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021792 lncRNA downstream 378225 15786237 ~ 15786804 (-) True XLOC_010553
TCONS_00020688 lncRNA downstream 384622 15779159 ~ 15780407 (-) True XLOC_010552
TCONS_00020687 lncRNA downstream 455885 15708204 ~ 15709144 (-) True XLOC_010551
TCONS_00020680 lncRNA downstream 1721640 14431515 ~ 14443389 (-) False XLOC_010545
TCONS_00022134 lncRNA upstream 84237 16266556 ~ 16270435 (-) True XLOC_010562
TCONS_00020702 lncRNA upstream 282875 16465194 ~ 16470842 (-) True XLOC_010564
TCONS_00020703 lncRNA upstream 344656 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00022135 lncRNA upstream 403776 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020707 lncRNA upstream 411030 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00020692 mRNA downstream 12830 16148761 ~ 16152199 (-) True XLOC_010557
TCONS_00020691 mRNA downstream 44088 16041643 ~ 16120941 (-) True XLOC_010556
TCONS_00020690 mRNA downstream 176709 15942887 ~ 15988320 (-) True XLOC_010555
TCONS_00020686 mRNA downstream 777570 15369634 ~ 15387459 (-) True XLOC_010550
TCONS_00020685 mRNA downstream 901930 15164983 ~ 15263099 (-) True XLOC_010549
TCONS_00020694 mRNA upstream 27889 16210208 ~ 16212615 (-) True XLOC_010559
TCONS_00020695 mRNA upstream 40075 16222394 ~ 16226180 (-) False XLOC_010560
TCONS_00020696 mRNA upstream 41357 16223676 ~ 16225260 (-) True XLOC_010560
TCONS_00020697 mRNA upstream 50302 16232621 ~ 16237844 (-) False XLOC_010561
TCONS_00020698 mRNA upstream 50302 16232621 ~ 16237860 (-) True XLOC_010561
TCONS_00020689 other downstream 350528 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020674 other downstream 1768330 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 2206144 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 2347089 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 2493810 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020706 other upstream 391095 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 495389 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 937745 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 939679 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020737 other upstream 1062589 17244908 ~ 17245047 (-) True XLOC_010582

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_06720165_06726223.mRNA True 1455 mRNA 0.45 6 CI01000016 6719505 ~ 6726223 (-)
bowfin (Amia calva) AMCG00021796 True 2632 mRNA 0.45 5 CM030130.1 30256031 ~ 30265454 (-)