RNA id: TCONS_00020702


Basic Information

Item Value
RNA id TCONS_00020702
length 676
lncRNA type retained_intron
GC content 0.45
exon number 2
gene id XLOC_010564
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16358348 ~ 16522013 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCCCACAGCAGCCCAGGGACCCTCAGCTGCTCAGGATGGCCCTTCGCTGTCTGACTGTAATGATTCATCTTCTGCACTCCAGCAGTGTGAACGAGAGACAGGTGGAGATCCGGAGCGCGCTGGACGATTATTTCCAACTGCTCAACTGGAACCGTCCACCGGACAGCCAGCAGGGAGATATGCACGCCTGGGAGGATAATCTCATTACCCTTCTTGAACATATGCTTAATGCCATCCCTGAGATCCTCCAATGTTCAGACCGGCCGGTGTTGCAGGCCATCTTTCTTAATAACAACTGCTTTGAGCACATCCTACGCCTCATCCAGAACAGCAAGGTAAGAATGATGCTGTTCTAAAACCAATGAGaaacatgcaggtttattagtcTTGAGAATTTAAATAAGTCTCACAGTTCATAATGGAAATGTGGTGATCTGTTGATGTTTGTTCTGAAAGACACAAAGCAGACTACTGCATATGTGAGCTCACTAATCTGAACCTCAGATATGTAATGCTTTCATCCAGAGattacttttaaatgtattctGCATTCAAGTTAAAGTGTTTTCTGATAACTAAAAAGTTGGTATGTGGCTTAGGCAAGTAAAAGATATTGTTTCTAGAAAAATTGCAGTAAGAGCAAGGGACGTCGCTAGGGGCACGTGACCCAGTAAA

Function

GO:

id name namespace
GO:0030220 platelet formation biological_process
GO:0005783 endoplasmic reticulum cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-283 Acts upstream of or within platelet formation. Predicted to be located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in gray platelet syndrome. Orthologous to human NBEAL2 (neurobeachin like 2).

Ensembl:

ensembl_id ENSDART00000160368

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022134 lncRNA downstream 194759 16266556 ~ 16270435 (-) True XLOC_010562
TCONS_00021792 lncRNA downstream 678390 15786237 ~ 15786804 (-) True XLOC_010553
TCONS_00020688 lncRNA downstream 684787 15779159 ~ 15780407 (-) True XLOC_010552
TCONS_00020687 lncRNA downstream 756050 15708204 ~ 15709144 (-) True XLOC_010551
TCONS_00020680 lncRNA downstream 2021805 14431515 ~ 14443389 (-) False XLOC_010545
TCONS_00020703 lncRNA upstream 56133 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00022135 lncRNA upstream 115253 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020707 lncRNA upstream 122507 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00020715 lncRNA upstream 195012 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00022136 lncRNA upstream 544346 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020699 mRNA downstream 124167 16318028 ~ 16341027 (-) True XLOC_010563
TCONS_00020698 mRNA downstream 227334 16232621 ~ 16237860 (-) True XLOC_010561
TCONS_00020697 mRNA downstream 227350 16232621 ~ 16237844 (-) False XLOC_010561
TCONS_00020695 mRNA downstream 239014 16222394 ~ 16226180 (-) False XLOC_010560
TCONS_00020696 mRNA downstream 239934 16223676 ~ 16225260 (-) True XLOC_010560
TCONS_00020704 mRNA upstream 83845 16554687 ~ 16590780 (-) False XLOC_010566
TCONS_00020705 mRNA upstream 85684 16556526 ~ 16590489 (-) False XLOC_010566
TCONS_00020710 mRNA upstream 134675 16605517 ~ 16619897 (-) False XLOC_010569
TCONS_00020709 mRNA upstream 134675 16605517 ~ 16619897 (-) False XLOC_010569
TCONS_00020708 mRNA upstream 134675 16605517 ~ 16619897 (-) False XLOC_010569
TCONS_00020689 other downstream 650693 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020674 other downstream 2068495 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 2506309 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 2647254 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 2793975 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020706 other upstream 102572 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 206866 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 649222 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 651156 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020737 other upstream 774066 17244908 ~ 17245047 (-) True XLOC_010582

Expression Profile

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