RNA id: TCONS_00020695


Basic Information

Item Value
RNA id TCONS_00020695
length 1882
RNA type mRNA
GC content 0.35
exon number 7
gene id XLOC_010560
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16222394 ~ 16226180 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGCGGaatgattttgtttaaaaatgacagAGGCAGAGGACGCGGTGAATGAAGCTTGGAGCTTTGAGCACATAAAAATGGATGTGTCAAAAAGGATAGTCAGACACCTGGAACCAGCGAGACCACTGCGCCGTTTCCGCTTGAATCAAGTTCCTCAAAGCTATGCTGAGACTAGACCAATAGAAAAACCCGACAACATTATTACAGTGGAGAATTTCTATGAAATCCTGCACCTTAAAAGCACCGAGACCCAACAAAAGAAGAAAGttgAAAGAATTTGCTACACTAGGGATTTCCTAGTTAAGATGGCAAACAGTCCAATGTCTAAGGAGAAACCTGAGTTTTTACCAGATCATCCAGTTGTTTTGAAGAATGGAAGACCCAGTGACCTGCCCAGATACTTCTCCACcagttacaacaacaacaactacaaacaCTTgtcTGACTAAATTGgaaaatttttattgttttgttttgtgttcttttaaattgataaaaaatggTGACCAAAGTGGGACGTCTTCAAAATCACTTGAGTTTACAAGTTAGTTATAAATGGTATAAAACCACCTTAAGCTTCACAATAAAAATTGAGGTTTTGTaaagacaaatattatttttaaaatgaaaaagtcaTTTTCTCAATTTCTGAACATGGTTTGTTTTCTCCAGACAGTTGGAATTTCTATTATTGTTTCTAACCATCGGACAGGTTTGATGTCAGACTCAGGCTTTTGAACCTTGCTAAATATTGTATATGTTGTGTTGATACACTGCTTTATTCATTTGATGTGTTAAAGTTCACGGTGTAGCTTGAAGTGGGCTTGAAGTGTTAAAGACTAAAGTGATGTGCACCTTAAACCACTGACCTATTTCTAGCAAGTTCATATGTCTGTGTAAGGCTTTATCGAATCACACTGGAATATTTTCCTTTTGGACAAGATATTATAAAAGCAAATGCTGTTTGCAAGCAAAATAGAACTGTCACTTTGACAATTATTAAATCTGATCGGTAACAAAGAGGTTTTTTAAAGGAACTCtccatttttttttagttgactGATATGGTAtggttaaacagttgagttttactatttttgaatccattcagccgatctccaggCACTTTTAGataagcataaataattgaatgtttAAACTGTTAGCGTCTCGCCAAACAATTTTCCtattttaaagcttgactcttctgtaattacattgtgCACTAAGACTTGACAGTTGCTATTCTTTCAGCCGATATGGCTAGGTACTTGTTCAGATGTAATAATCAAGGCCATACCATGACTGCAGTAGGTGCAATATTACGCAGCAACTAAAATAGTGTCCAGCCATATCGacctagaaaaaaaaattctaccagaAACTACAGCCTAGTCgagttttaaatatgaaaattatttttttattaatttttaagcaagatgctaatggtctaatccatttcaatgatctatgctaagctaggctaaatgtttttttttccgctAGATCGGTTGAATGGAtctaaaaatggtaaaactcaactgtctTAACTTCAGGGCAGTTGTAACATTTTTACTCaagttatttttctatttttcctAGCGCAACACCTTAAATACATCTTTCTTCTTGATATGAGTATGTGTGACATGTATGTCAATGTTGTGGATTGGATTGGAGTACGGACGTATTTGTTACAGTACTATATCTTTTCAGTATTAGAGATTACTTCAAAAATGTTTGATTATAAACTCTGGATCTTGTGCAAGGATCCTCCTCCACTATTTGCACATTTGGTTAAAGGCAATATTTATATCACAGTGTGGTGTATTAGCTCTTTGAATCCATTACACTCAGTAAAGAATTGTCTTTTACTTGA

Function

GO:

id name namespace
GO:0045947 negative regulation of translational initiation biological_process
GO:0043186 P granule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008190 eukaryotic initiation factor 4E binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-203 Predicted to enable eukaryotic initiation factor 4E binding activity. Predicted to be involved in negative regulation of translational initiation. Predicted to act upstream of or within negative regulation of translation. Located in P granule. Is expressed in blastomere and primordial germ cell. Orthologous to human C8orf88 (chromosome 8 open reading frame 88).

Ensembl:

ensembl_id ENSDART00000108965

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021792 lncRNA downstream 435590 15786237 ~ 15786804 (-) True XLOC_010553
TCONS_00020688 lncRNA downstream 441987 15779159 ~ 15780407 (-) True XLOC_010552
TCONS_00020687 lncRNA downstream 513250 15708204 ~ 15709144 (-) True XLOC_010551
TCONS_00020680 lncRNA downstream 1779005 14431515 ~ 14443389 (-) False XLOC_010545
TCONS_00022134 lncRNA upstream 40376 16266556 ~ 16270435 (-) True XLOC_010562
TCONS_00020702 lncRNA upstream 239014 16465194 ~ 16470842 (-) True XLOC_010564
TCONS_00020703 lncRNA upstream 300795 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00022135 lncRNA upstream 359915 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020707 lncRNA upstream 367169 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00020694 mRNA downstream 9779 16210208 ~ 16212615 (-) True XLOC_010559
TCONS_00020693 mRNA downstream 40075 16165029 ~ 16182319 (-) True XLOC_010558
TCONS_00020692 mRNA downstream 70195 16148761 ~ 16152199 (-) True XLOC_010557
TCONS_00020691 mRNA downstream 101453 16041643 ~ 16120941 (-) True XLOC_010556
TCONS_00020690 mRNA downstream 234074 15942887 ~ 15988320 (-) True XLOC_010555
TCONS_00020697 mRNA upstream 6441 16232621 ~ 16237844 (-) False XLOC_010561
TCONS_00020698 mRNA upstream 6441 16232621 ~ 16237860 (-) True XLOC_010561
TCONS_00020699 mRNA upstream 91848 16318028 ~ 16341027 (-) True XLOC_010563
TCONS_00020700 mRNA upstream 132168 16358348 ~ 16522013 (-) False XLOC_010564
TCONS_00020701 mRNA upstream 132200 16358380 ~ 16481046 (-) False XLOC_010564
TCONS_00020689 other downstream 407893 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020674 other downstream 1825695 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 2263509 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 2404454 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 2551175 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020706 other upstream 347234 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 451528 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 893884 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 895818 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020737 other upstream 1018728 17244908 ~ 17245047 (-) True XLOC_010582

Expression Profile

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