RNA id: TU594299



Basic Information


Item Value
RNA id TU594299
length 2435
lncRNA type read_through
GC content 0.43
exon number 2
gene id G518142
representative True

Chromosome Information


Item Value
chromosome id CI01000360
NCBI id null
chromosome length 778440
location 292252 ~ 392209 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCCCAGTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCCTTTTTCTTTTCAACTGAAGAAAGAAAGACATGAACATCTTGGATGACATGGGGCTGAGTAAATTATCAGGAAATTTTAATTCTGAAGTGAACCAATCCTTTAAAGCTTAACATTTAGGTTTGTGCATTTAAAAACTGCTGTGATTCTTGCATGCCAACTCAAAGTCAACATGGATTGTGGGATAGAGTAGCCCAAACTACACACTCCAAAAATACTCTGCATCATTCGGCTGACTGTTTGTCCTCCTTAGCACTAATTCTTATCTCGCACACTATTTAGGATGGATATGTGAATTGGGCTACAGCGACAGAGAGCTGTTCAGTAGTTCAGTTGGGGGATGTGCTGGGTTTCATTAGGTTGCAGGACTCTTTAATTCATTGCAGTCTGGCCTCGTACTGATGAAGTCATTCATCAAGCTCACGGTCAGCCGCTCCGTTGGGGAGTGTGTGTGTGTGTGTGCGAAGGGGGGTTGATGTGTGTTTGGGGGCACTGGGGGTTCAGGCTCGACGTTACATTGAGTTGCGGTGAAGAGCACATCACACCCTGTAATTTAGCCAATAGAGTGCAAACACACATGCACACACATGCACTCTGGGAAATAAAATCGCCCCACATGCACTTGCCGCGGACTGTATGATGCACTGACACATCCCAGAGGACTCCTTCCTGAACCGCGTGTGTGCGTTCGGAATGGCGCAAGCAGCAAAAAGCCGGTGCCATTAACAGGCTGCAGCGTAATTAACAGTTGATTCGATCGCCGGCTAGCGCTGGCATCTGCAATAAAATAAGCTGCTCATTTTTCTGTCTAATAATTTATAGACTGCACCTCTTCACATTCTGTGGTCAGTCCGTTTCTCAGGATATTGCTCCGGCTCTTAGTAATTCACTCTATTGATTGAGTTTAAAGCGACAGGAACACTTTCAATCTTTCTCTGATCTCTCATGCTAAGTTTACTCTTCATCATGCTGTTAGCGTGTCATGCACACCGCTGGACAGAATTAATAATTCATATAAAGGTAGTGCTCTGTTCGGGTTTCACTTGTTTTGTCATTTGATGCTCTATTTTACAGTGCTAGACTCAACCTGCGTTGTCATTCGGATGTGCATTACTCTGGTTTCACAGCTGTATTTACAGAACGCACAATTTGGGATCCATTTAAAAAAAAAAAAAAAAAAAAAAATTGTTATTTATTAATACTTTGCATAGGATTCATTTTAAAAGTGTATGATTGTGCGTACATTCATCCCCACCACATATGTGAAGCTTACAATGCCTAATTTCTCTGTGCATAACCCGTATGCATATTCCCATCCATGTTAAAACACTAGCTCATGATAATACAGATTGTGAATGCCATCACAGCGCAGAGTCAGTGGATAATACACACACATTTGCACTAATGTTTTTATAAATCCCAAAATGTGCATGGGAAATCACATACACTCATTTCCATGGCCGTTTGCACCATTTATCAGGCCCAAGGTCTGTATTTACAGTGATTTGTGGAACAGAGCTCAATGAAACCGGATCTGTTGTATATTGTGTGTCTGCGGTCAGGATATCTTAAGCTGGCTTTGAAGGGTTTTAAGCGTTCTCTGTTTTTTTTCCTGTCGGGGAAGAAAAGACATAATGTCATCTCAACTCTTCAAACGTGTCTCTGGTTTGTTTAAAGGGGTGGTTGATTATGATTTCACTTTTTTAACTTTAGTTAGTGTGTAATGTTGCTGTTTGAGCATAAACAACATCTGCAAAGTTACGATGCTCAAAGTTCAATGCAATGGGAGATATTTTCTTTTACAGAAATCACTTTTTAAGGACTACAACAAACGGCTGGTAGGGACTACAATGAGCTTCTTCTGGGATAGTGACATCACTAACCCCAACATTTACATAAACCCCGCCCCTGAGAACACACAACAAAGGGGGTGAGGCCATGTTGGGCTGCTTTAGAGAAGAGGAAGAGTTGTTGTAGTAGAGTGTTGTTGCCGTCATTTTACGCCGGACTGCTTCACAAACGAGGGTCAATTCAACGCTGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTCGATGAGTTGAATCAACTCCACAGCANNNNNNNNNNNNTAACCATTCAGAAACGTCCAGTTTCATTCTAGAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCGACCGAAGCGCGAGCTGTTAAAGCTCCGCCCCCTTCTGGAAAGGGAGCCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACGGGGCAAAACCCAAATAGGGGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU594266 lncRNA upstream 89315 202513 ~ 202937 (+) True G518118
TU594253 lncRNA upstream 120104 171928 ~ 172148 (+) True G518105
TU594156 lncRNA upstream 179190 112694 ~ 113062 (+) True G518013
TU594131 lncRNA upstream 191352 64327 ~ 100900 (+) True G517989
TU594471 lncRNA downstream 287373 679582 ~ 679807 (+) True G518309
CI01000360_00239322_00269102.mRNA mRNA upstream 23064 239126 ~ 269188 (+) True CI01000360_00239322_00269102
CI01000360_00045139_00056179.mRNA mRNA upstream 235906 45139 ~ 56346 (+) True CI01000360_00045139_00056179
CI01000360_00032742_00035125.mRNA mRNA upstream 257103 32742 ~ 35149 (+) True CI01000360_00032742_00035125
CI01000360_00461890_00465387.mRNA mRNA downstream 69494 461703 ~ 465569 (+) True CI01000360_00461890_00465387
CI01000360_00577462_00621640.mRNA mRNA downstream 185253 577462 ~ 621645 (+) True CI01000360_00577462_00621640
CI01000360_00631283_00631570.mRNA mRNA downstream 237891 630100 ~ 631892 (+) True CI01000360_00631283_00631570
CI01000360_00647308_00657918.mRNA mRNA downstream 254625 646834 ~ 658405 (+) True CI01000360_00647308_00657918
CI01000360_00667891_00672778.mRNA mRNA downstream 275682 667891 ~ 672778 (+) True CI01000360_00667891_00672778

Expression Profile